Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq2198 89.7 3e-14 seq15876 86.0 4e-13 seq3167 86.0 4e-13 seq41506 84.2 1e-12 seq7918 84.2 1e-12 seq202399 80.6 2e-11 seq8243 78.8 5e-11 >seq2198 Length=88711 Score = 89.7 bits (98), Expect = 3e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 36016 CGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 35960 >seq15876 Length=25779 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||||| ||||| || ||||| |||||||||||||| Sbjct 24587 GCCCGTGTCGACCTTTTATCTAATAAATGCGTCCCTCCCGGAAGTGGGGGTTTGTTGCAC 24646 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24647 GTATTAGCTCT 24657 >seq3167 Length=41999 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||| |||||||| ||| ||||||||| |||||| Sbjct 30395 GCCCGCGTTGACCTTTTATCTAATAAATGCGTCCCTTCCGGAATTCGGGGTTTTTTGCAC 30454 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 30455 GTATTAGCTCT 30465 >seq41506 Length=3812 Score = 84.2 bits (92), Expect = 1e-12 Identities = 61/68 (90%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || ||||||||||||||||||||| |||||||| ||||||| ||||||||||||| | Sbjct 338 CGAGTCGACCTTTTATCTAATAAATGCGTCCCTTCCGGAAGTCGCGGTTTGTTGCACGTA 397 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 398 TTAGCTCT 405 >seq7918 Length=24972 Score = 84.2 bits (92), Expect = 1e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||| |||||||| ||||||| ||||||||||||| ||| Sbjct 1905 GTCGACCTTTTATCTAATAAATGCGTCCCTTCCGGAAGTCGAGGTTTGTTGCACGTATTA 1846 Query 8909 GCTCT 8913 ||||| Sbjct 1845 GCTCT 1841 >seq202399 Length=17322 Score = 80.6 bits (88), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| || |||| |||||||||||||||||||| Sbjct 16923 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCTCTTCTGGAAGTCGGGGTTTGTTGCAC 16864 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16863 GTATTAGCTCT 16853 >seq8243 Length=55974 Score = 78.8 bits (86), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||| | |||||| |||||| |||||||||||||| ||| Sbjct 54863 GTCGACCTTTTATCTAATAAATGCGTTCCTTCCGGAAGTCAGGGTTTGTTGCACGTATTA 54804 Query 8909 GCTCT 8913 ||||| Sbjct 54803 GCTCT 54799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28282535810232