Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq501 109 2e-20 seq3917 87.8 7e-14 >seq501 Length=132376 Score = 109 bits (120), Expect = 2e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 40 ACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATT 99 ||| || || | |||||| ||||||||||||||||| || | |||||||||||||||||| Sbjct 67838 ACAATACGCATGGGATTAACCGCTTCAATGGGATCTTTTGTTCTGGTCGGAGGAGAAATT 67779 Query 100 ACCAAACGTCTAGCATTCCC 119 |||||||||||||||||||| Sbjct 67778 ACCAAACGTCTAGCATTCCC 67759 >seq3917 Length=1447 Score = 87.8 bits (96), Expect = 7e-14 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4 TATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCT 63 ||| |||| |||||| ||||| | ||| || | | | ||||| | ||||| || | Sbjct 514 TATAATACCATGCAATTTGTGTAATTAGACATACAAATAATATGCATGAGATTAATCGTT 573 Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||| | || ||| |||||||| |||||||| || |||||| |||||| Sbjct 574 TCAATGGGATCTTTCATTCTGATCGGAGGATAAATTACCGAATGTCTAGAATTCCC 629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19040568081600