Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq203790 95.1 7e-16 seq171264 95.1 7e-16 seq200453 89.7 3e-14 seq197652 89.7 3e-14 seq122586 89.7 3e-14 >seq203790 Length=1361 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 301 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGATTTGTTGCAC 360 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 361 GTATTAGCTCT 371 >seq171264 Length=1179 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 580 GCCCGCGTTGACCTTTAATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 639 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 640 GTATTAGCTCT 650 >seq200453 Length=799 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||| |||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 85 GCCCGCGTTAACCTTTAATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 26 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 25 GTATTAGCTCT 15 >seq197652 Length=678 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| Sbjct 1 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTAGCTC 60 Query 8913 T 8913 | Sbjct 61 T 61 >seq122586 Length=964 Score = 89.7 bits (98), Expect = 3e-14 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 809 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGATTTGTTGCAC 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28337684350272