Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq16536 91.5 8e-15 seq162182 86.0 4e-13 seq24886 86.0 4e-13 >seq16536 Length=909 Score = 91.5 bits (100), Expect = 8e-15 Identities = 60/64 (94%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| | Sbjct 1 TTGACATTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTAG 60 Query 8910 CTCT 8913 |||| Sbjct 61 CTCT 64 >seq162182 Length=676 Score = 86.0 bits (94), Expect = 4e-13 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 344 GTTGACCTTTTATCTAATAAATGCATCCTTTCCAAAAGTCGGGATTTGTTGCACG 398 >seq24886 Length=1021 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||||| |||| |||||||| | |||||||||| Sbjct 123 GCCCGCGTTGACCTTTTATCTAATAAATGCATCACTTCTAGAAGTCGAGATTTGTTGCAC 64 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 63 GTATTAGCTCT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28303126153764