Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_033774.1
Length=8913
Score E
Sequences producing significant alignments: (Bits) Value
seq16536 91.5 8e-15
seq162182 86.0 4e-13
seq24886 86.0 4e-13
>seq16536
Length=909
Score = 91.5 bits (100), Expect = 8e-15
Identities = 60/64 (94%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909
||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 1 TTGACATTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTAG 60
Query 8910 CTCT 8913
||||
Sbjct 61 CTCT 64
>seq162182
Length=676
Score = 86.0 bits (94), Expect = 4e-13
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 344 GTTGACCTTTTATCTAATAAATGCATCCTTTCCAAAAGTCGGGATTTGTTGCACG 398
>seq24886
Length=1021
Score = 86.0 bits (94), Expect = 4e-13
Identities = 63/71 (89%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || ||||||||||||||||||||||||||| |||| |||||||| | ||||||||||
Sbjct 123 GCCCGCGTTGACCTTTTATCTAATAAATGCATCACTTCTAGAAGTCGAGATTTGTTGCAC 64
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 63 GTATTAGCTCT 53
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28303126153764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |