Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq3048 150 7e-33 seq2826 150 7e-33 >seq3048 Length=155691 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || || | ||||||||| | |||||||||| Sbjct 72161 TTTATGATACTATGCAATTTGTGCGACCCGATATACAGACAGTATGCATGGGATTAGCCG 72102 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||| ||||||||| |||| || |||||||| |||||||||||||||||||||||||| Sbjct 72101 CTTCGATGGGATCTTTTATTCTTGTCGGAGGGGAAATTACCAAACGTCTAGCATTCCC 72044 >seq2826 Length=1015 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || || | ||||||||| | |||||||||| Sbjct 314 TTTATGATACTATGCAATTTGTGCGACCCGATATACAGACAGTATGCATGGGATTAGCCG 373 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||| ||||||||| |||| || |||||||| |||||||||||||||||||||||||| Sbjct 374 CTTCGATGGGATCTTTTATTCTTGTCGGAGGGGAAATTACCAAACGTCTAGCATTCCC 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045765040640