Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq1006 98.7 6e-17 seq877 98.7 6e-17 seq825 98.7 6e-17 seq809 98.7 6e-17 seq758 98.7 6e-17 seq755 98.7 6e-17 seq6 98.7 6e-17 seq7 82.4 4e-12 >seq1006 Length=1016 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 246 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 305 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 306 GTATTAGCTCT 316 >seq877 Length=1140 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 266 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 207 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 206 GTATTAGCTCT 196 >seq825 Length=1175 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 732 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 673 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 672 GTATTAGCTCT 662 >seq809 Length=1022 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 713 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 772 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 773 GTATTAGCTCT 783 >seq758 Length=1048 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 663 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 722 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 723 GTATTAGCTCT 733 >seq755 Length=1194 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 369 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 428 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 429 GTATTAGCTCT 439 >seq6 Length=38222195 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 32775216 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 32775275 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 32775276 GTATTAGCTCT 32775286 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 32789217 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 32789276 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 32789277 GTATTAGCTCT 32789287 >seq7 Length=23403891 Score = 82.4 bits (90), Expect = 4e-12 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| Sbjct 1069639 GTTGACCTTTTATCTAATAAATGCATCCATTCCAAAAGTCAGGATTTGTTGCACG 1069693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28405425944544