Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq602486 95.1 7e-16 seq532851 93.3 2e-15 seq608558 89.7 3e-14 seq472883 89.7 3e-14 seq16024 86.0 4e-13 >seq602486 Length=2287 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || |||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 281 GCCCGTGTTAACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGATTTGTTGCAC 340 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 341 GTATTAGCTCT 351 >seq532851 Length=347 Score = 93.3 bits (102), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || |||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 67 GCCCGTGTTAACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGATTTGTTGCAC 8 Query 8905 G 8905 | Sbjct 7 G 7 >seq608558 Length=4881 Score = 89.7 bits (98), Expect = 3e-14 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1086 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGAGATTTGTTGCACG 1033 >seq472883 Length=465 Score = 89.7 bits (98), Expect = 3e-14 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 36 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGAGATTTGTTGCACG 89 >seq16024 Length=4123 Score = 86.0 bits (94), Expect = 4e-13 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 3418 GTTGACCTTTTATCTAATAAATGCATCCATTCCAAAAGTCGGGATTTGTTGCACG 3364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28206358793448