Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq89515 154 6e-34 seq18275 132 2e-27 seq50610 131 6e-27 seq3380 122 3e-24 seq9723 98.7 4e-17 seq7324 80.6 1e-11 >seq89515 Length=155578 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||| |||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 73292 TTTACGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 73233 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct 73232 CGTCAATGGGATCTTTTATCTTGGTTGGAGGAGAAATTACCAAACGTCTAGCATTCCC 73175 >seq18275 Length=82482 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| || ||| ||| |||| |||| | ||||||||| Sbjct 11615 TTTATGATACTATGCAATTTGTGTGACAAGATGTCCATACATGATGCATGGGATTAGCCA 11556 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | |||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||| Sbjct 11555 CGTCAATGGGATCTTTTATCTGGGTTGGAGGAGAAATTACCAAATGTCTAGCATTCCC 11498 >seq50610 Length=5575 Score = 131 bits (144), Expect = 6e-27 Identities = 95/110 (86%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||| |||||||||||| |||||| |||| | ||| |||| ||||| | ||||||| || Sbjct 2752 TTTACGATACTATGCAACTTGTGCGACCAAATGTCCATACAATATGCATGGGATTAGTCG 2811 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 | |||||||||||| ||||| |||| |||||||||||||||||||||||| Sbjct 2812 CGTCAATGGGATCTCTTATCTTGGTTGGAGGAGAAATTACCAAACGTCTA 2861 >seq3380 Length=32884 Score = 122 bits (134), Expect = 3e-24 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 8 ATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAA 67 |||||||| || |||||| || ||| ||| |||| |||| | |||||||||| ||| Sbjct 1038 ATACTATGTAATTTGTGCGACTAGATGTCCATACAATATGTATGGGATTAGCCGTGCCAA 979 Query 68 TGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCGAG 122 |||||||| ||||| | || |||||||||||||||||||||||||||||| |||| Sbjct 978 TGGGATCTTTTATCTTAGTTGGAGGAGAAATTACCAAACGTCTAGCATTCTCGAG 924 >seq9723 Length=61308 Score = 98.7 bits (108), Expect = 4e-17 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||| |||||||| ||| ||||| |||||| ||| | || ||||| | || || |||| Sbjct 60373 TTTACGATACTATACAATTTGTGTGACCAGATGTCCATGCAATATGCATTGGGTTGGCCG 60314 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 ||||||| ||| ||||| |||| |||||| || |||||||| ||||||||||| Sbjct 60313 TGTCAATGG-ATCACTTATCTTGGTTGGAGGAAAATTTACCAAAAGTCTAGCATTC 60259 >seq7324 Length=1611 Score = 80.6 bits (88), Expect = 1e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 || |||||||||||| ||||| |||| ||||||||| ||||| |||||||||||||||| Sbjct 793 GCGTCAATGGGATCTTTTATCTTGGTTGGAGGAGAAGTTACCTAACGTCTAGCATTCCC 735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19027752235200