Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq10520 95.1 7e-16 seq7968 95.1 7e-16 seq1811 95.1 7e-16 seq1593 95.1 7e-16 seq89493 84.2 1e-12 seq5193 84.2 1e-12 >seq10520 Length=91749 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 88444 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 88385 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 88384 GTATTAGCTCT 88374 >seq7968 Length=42325 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 34245 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 34186 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 34185 GTATTAGCTCT 34175 >seq1811 Length=159848 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 6943 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 7002 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7003 GTATTAGCTCT 7013 >seq1593 Length=76168 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 41249 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 41308 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 41309 GTATTAGCTCT 41319 >seq89493 Length=43570 Score = 84.2 bits (92), Expect = 1e-12 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 8858 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7569 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 7614 >seq5193 Length=180230 Score = 84.2 bits (92), Expect = 1e-12 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTG-TTGCA 8903 || || || ||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 126564 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTTGCA 126505 Query 8904 C 8904 | Sbjct 126504 C 126504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28377793512420