Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_002035.1 Length=3050 Score E Sequences producing significant alignments: (Bits) Value seq16461 324 3e-85 seq7838 82.4 1e-12 >seq16461 Length=146837 Score = 324 bits (358), Expect = 3e-85 Identities = 221/245 (90%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 2809 TTGCTATAAACTGTCTGAAGTCACTAAACACATTGTGGTGAACGGGTTGTCCATCCAGCT 2868 ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| Sbjct 1 TTGCTATAAACTGCCTGAAGTCACTAAACGTTTTACGGTGAACGGGTTGTCCATCCAGCT 60 Query 2869 TACGGCTAAAATGGTCAGTCGTAGAGGAATCTACGCCAGCAGACTTACAAGTCTCTGAGG 2928 |||||||||||||||||||||| ||| ||| ||||| | ||| |||||| ||||||||| Sbjct 61 TACGGCTAAAATGGTCAGTCGTGGAGAGATCCACGCCGG-AGATTTACAAATCTCTGAGG 119 Query 2929 CACCTTTGAAACCATCTCCTAGGTTTCTTCGGAAGGACTTCGGTCCGTGTACTTCTAGCA 2988 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CGCCTTTGAAACCATCTCCTAGGTTTCTTCGGAAGGACTTCGGTCCGTGTACTTCTAGCA 179 Query 2989 CAACGTGCTAGTTTCAGGGTACGGGTG--CCCCCCACT-TTTGTGGGGCCTCCAAAAGGA 3045 ||| ||||||||| || ||||||||| ||||||||| | || |||||||||||||||| Sbjct 180 CAAGATGCTAGTTTTAGAGTACGGGTGCCCCCCCCACTCTGTGGGGGGCCTCCAAAAGGA 239 Query 3046 GACCA 3050 ||||| Sbjct 240 GACCA 244 Score = 82.4 bits (90), Expect = 1e-12 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 2788 GCGGGAGCTGAGTTGGCAGTATTGCTATAAACTGTCTGAAGTCACTAAAC 2837 |||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 840 GCGGGATCTGAGTTGGCAGTATTGCTATAAACTGCCTGAAGTCACTAAAC 791 >seq7838 Length=81957 Score = 82.4 bits (90), Expect = 1e-12 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 2788 GCGGGAGCTGAGTTGGCAGTATTGCTATAAACTGTCTGAAGTCACTAAAC 2837 |||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 62 GCGGGATCTGAGTTGGCAGTATTGCTATAAACTGCCTGAAGTCACTAAAC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9644499735750