Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq75419 150 7e-33 seq10 150 7e-33 seq8 150 7e-33 seq5 143 1e-30 seq2 132 2e-27 seq13 125 3e-25 seq6 125 3e-25 >seq75419 Length=160230 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 75161 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 75102 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 75101 CTTCAATGGGATCTTTTCTCCTGGCCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 75044 >seq10 Length=114683840 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 113790845 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 113790786 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 113790785 CTTCAATGGGATCTTTTCTCCTGGCCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 113790728 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 40205356 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 40205297 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| || |||||||||||||||||||||||||||||| Sbjct 40205296 CTTCAATGGGATCTTTTCTCCTGGCCGAAGGAGAAATTACCAAACGTCTAGCATTCCC 40205239 Score = 141 bits (156), Expect = 4e-30 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| || ||| | | |||| ||||| | ||||| || | Sbjct 43580153 TTTATGATACTATGCAATTTGTGCAACTAGATGTGCATACAATATGCATGGGATTGGCTG 43580212 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 |||||||||||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct 43580213 CTTCAATGGGATCTTTTCTCCTGGCCGGAGGAGAAATTACCAAACGTCTAGCATTC 43580268 Score = 123 bits (136), Expect = 9e-25 Identities = 99/118 (84%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | || | ||||| | ||||| || | Sbjct 110720321 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATAAA-TATGCATGGGATTGGCTG 110720379 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| ||||| || |||||| ||||||||||||| |||||| |||||||| ||| Sbjct 110720380 CTTCAATGTGATCTTTTCTCCTGGCCGGAGGAGAAATTGCCAAACATCTAGCATCCCC 110720437 Score = 120 bits (132), Expect = 1e-23 Identities = 98/118 (83%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| | ||| | | |||| ||||| | |||| ||| Sbjct 25317328 TTTATGATACTATGCAATTTGTGCAAATAGATGTGCATACAATATGCATGGGATG-GCCA 25317270 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||| || ||||||||||||||||| ||||||||||||| Sbjct 25317269 CTTCAATGGGATCTTTTCTCCTAGTTAGAGGAGAAATTACCAAATGTCTAGCATTCCC 25317212 Score = 113 bits (124), Expect = 2e-21 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 50323724 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 50323665 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCA 103 |||||||||||||| || |||| | |||||||||||||| || Sbjct 50323664 CTTCAATGGGATCTTTTCTCCTAGCCGGAGGAGAAATTATCA 50323623 >seq8 Length=127390875 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 20990336 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 20990395 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 20990396 CTTCAATGGGATCTTTTCTCCTGGCCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 20990453 Score = 78.8 bits (86), Expect = 4e-11 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 67 ATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| || || ||||||||||||||||||||||||||| ||||||||| Sbjct 54671669 ATGGGATCTATTCTCTTGGTCGGAGGAGAAATTACCAAACGTCCAGCATTCCC 54671721 Score = 78.8 bits (86), Expect = 4e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 |||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || Sbjct 122317938 CTTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCT 122317997 Query 61 GCTTCAATGGG 71 ||||||||||| Sbjct 122317998 GCTTCAATGGG 122318008 >seq5 Length=59691364 Score = 143 bits (158), Expect = 1e-30 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 36479950 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 36479891 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCC 118 |||||||||||||| || |||||| |||||||||||||||||||||||||||| ||| Sbjct 36479890 CTTCAATGGGATCTTTTCTCCTGGCCGGAGGAGAAATTACCAAACGTCTAGCAATCC 36479834 >seq2 Length=101023042 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 6822343 TTTATGATACTATACAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 6822402 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| |||||| || |||| || |||||||||||||||||| ||||||||||||| Sbjct 6822403 CTTCAATAGGATCTTTTCTCCTAGTTGGAGGAGAAATTACCAAATGTCTAGCATTCCC 6822460 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| |||||||| || |||||| |||||| | | |||| ||||| | ||| | || Sbjct 32185744 TTTATAATACTATGTAATTTGTGCAACCAGATGTGCATACAATATGCATGGGACTGGCTA 32185685 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||| | ||||||||||||| |||||||||||||||||| Sbjct 32185684 CTTCAATGGGATCTTTTCTCCTAGCTGGAGGAGAAATTATCAAACGTCTAGCATTCCC 32185627 >seq13 Length=144148110 Score = 125 bits (138), Expect = 3e-25 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 3 TTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGC 62 |||||||| ||||||| |||||| |||||| | | |||| ||||| | |||| || || Sbjct 101215355 TTATGATATTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGTGATTGGCTGC 101215414 Query 63 TTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||| |||||| || ||||||| |||||||||| |||||||| |||||||||||| Sbjct 101215415 TTCAATAGGATCTTTTCTCCTGGTTGGAGGAGAAACTACCAAACATCTAGCATTCCC 101215471 >seq6 Length=121339338 Score = 125 bits (138), Expect = 3e-25 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| || ||| || |||| ||||| | ||||| || | Sbjct 50206901 TTTATGATACTATGCAATTTGTGCAAC-AGATGTCA-TACAATATGCATGGGATTGGCTG 50206844 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| ||||||||||||| |||| ||||||||||||| Sbjct 50206843 CTTCAATGGGATCTTTTCTCCTGGCTGGAGGAGAAATTATCAAATGTCTAGCATTCCC 50206786 Score = 109 bits (120), Expect = 2e-20 Identities = 95/117 (81%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| |||||| | | |||| ||||| | ||||| | | Sbjct 66280747 TTTATGATACTATGCAATTTGTGTAACCAGATGTGCATACAATATGCATGGGATTGGTTG 66280688 Query 62 CTTCAATGGGA-TCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 |||| |||||| | | || |||||| ||| ||||||||||||||||||||| |||| Sbjct 66280687 CTTCGATGGGATTTTTTTCTCCTGGCTGGATGAGAAATTACCAAACGTCTAGTATTC 66280631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19030688713920