Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq1034 150 7e-33 seq3 145 3e-31 seq10 141 4e-30 seq1 141 4e-30 seq9 136 2e-28 seq8 136 2e-28 seq6 136 2e-28 seq12 123 9e-25 seq2 123 9e-25 >seq1034 Length=160161 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 75175 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 75116 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 75115 CTTCAATGGGATCTTTTCTCCTGGCCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 75058 >seq3 Length=45765648 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 5356296 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 5356237 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||| Sbjct 5356236 CTTCAATGGGATCTTTTCTCCTAGTCCGAGGAGAAATTACCAAACGTCTAGCATTCCC 5356179 Score = 131 bits (144), Expect = 6e-27 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| || ||| |||||| | | |||| ||||| | |||| || | Sbjct 36098672 TTTATGATACTATGCAATTTCTGCAACCAGATGTGCATACAATATGCATGAGATTGGCTG 36098613 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCC 118 |||||||||||||| || |||| | || ||||||||||||||||||||||||||||| Sbjct 36098612 CTTCAATGGGATCTTTTCTCCTAGCCGAAGGAGAAATTACCAAACGTCTAGCATTCC 36098556 >seq10 Length=62175169 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| || | Sbjct 24069454 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCTG 24069395 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||| | |||||||||||||||||||| |||||||||||| Sbjct 24069394 CTTCAATGGGATCTTTTCTCCTAGCCGGAGGAGAAATTACCAAACATCTAGCATTCCC 24069337 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| | | Sbjct 18109264 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGTTG 18109323 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| ||||||| |||||||||||||||||||||||| Sbjct 18109324 CTTCAATGGGATCTTTTCTCCTGGCTGGAGGAGTAATTACCAAACGTCTAGCATTCCC 18109381 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| || ||| |||||| | |||||||||| | ||||| || | Sbjct 28180171 TTTATGATACTATACAATTTTTGCAACCAGATGTGAATACAGTATGCATGGGATTGGCTG 28180112 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||| | || |||||| | ||||||||||||||||| ||||||||||||| Sbjct 28180111 CTTTAATGGGATATTTTCTCCTGGCCCGAGGAGAAATTACCAAATGTCTAGCATTCCC 28180054 >seq1 Length=55868233 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| ||||||||||||| | || |||||| | | |||| ||||| ||||||| || | Sbjct 11196369 TTTATAATACTATGCAAATCGCGCAACCAGATGTGCATACAATATGCATAGGATTGGCTG 11196428 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||| Sbjct 11196429 CTTCAATGGGATCTTTTCTCCTGGCCGGAGGAGAAATTCCCAAACGTCTAGCATTCCC 11196486 >seq9 Length=70713020 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| ||||||| |||||| ||||| | | |||| |||| || ||||| || | Sbjct 68117187 TTTATGATATTATGCAATTTGTGCAGCCAGATGTGCATACAATATGTGTGGGATTGGCTG 68117246 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||| | ||||||||||||||||||||||||||||||||| Sbjct 68117247 CTTCAATGGGATCTTTTCTCCTAGCCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 68117304 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| | ||| | | |||| ||||| | ||||| || Sbjct 39187240 TTTATGATACTATGCAATTTGTGTAGCTAGATGTGCATACAATATGCATGGGATTGGCTT 39187181 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||||| || |||||||| || |||||||||||||||||||||||||||| Sbjct 39187180 CTTGAATGGGATCTTTTCTCCTGGTCAGAAGAGAAATTACCAAACGTCTAGCATTCCC 39187123 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | || | | ||| | ||||| || | Sbjct 51584299 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATAGAATGTGCATGGGATTGGCTG 51584358 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||| || | |||||||||||| |||||||||||| |||||||||||| Sbjct 51584359 CTTCAATGGGATTGTTTCTGCTGGTCGGAGGAAAAATTACCAAACATCTAGCATTCCC 51584416 >seq8 Length=57128820 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || |||||| |||||| | | |||| ||||| ||||||| | | Sbjct 51045420 TTTATGATACTATGTAATTTGTGCAACCAGATGTGCATACAATATGCATAGGATTGACTG 51045361 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| || |||||| ||||||| ||||||||||||||||||||||||| Sbjct 51045360 CTTCAATGGTATCTTTTCTCCTGGCCGGAGGATAAATTACCAAACGTCTAGCATTCCC 51045303 Score = 122 bits (134), Expect = 3e-24 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||| | | |||| | | Sbjct 3260774 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATACATGAGATTGGTTG 3260715 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 |||||||||||||| || || ||| ||||||||||||||||||||||||||||| Sbjct 3260714 CTTCAATGGGATCTTTTCTCATGGCTGGAGGAGAAATTACCAAACGTCTAGCATT 3260660 >seq6 Length=51074515 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||| | | | |||| ||||||| ||||| | | Sbjct 3100535 TTTATGATACTATGCAATTTGTGCAACCAAATGTGCATACAATATGCGTGGGATTGGTTG 3100476 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| |||| ||||||||||||||||| |||||||||| Sbjct 3100475 CTTCAATGGGATCTTTTCTCCTGGACGGAAGAGAAATTACCAAACGTTTAGCATTCCC 3100418 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| ||||||| |||||| |||||| | | |||| ||||| | ||||| | | Sbjct 35604321 TTTATGATATTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGCCTG 35604380 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| |||||||||||||||||||| |||||||||||| Sbjct 35604381 CTTCAATGGGATCTTTTCTCCTGGCCGGAGGAGAAATTACCAAACCTCTAGCATTCCC 35604438 >seq12 Length=35429946 Score = 123 bits (136), Expect = 9e-25 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | |||| | | Sbjct 17046894 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATCGGTTG 17046835 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 |||||||||||||| || |||| | |||||| ||||||||||||||||||||||| Sbjct 17046834 CTTCAATGGGATCTTTTCTCCTAGCTGGAGGACAAATTACCAAACGTCTAGCATTC 17046779 >seq2 Length=62769430 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || |||||| |||||| | |||| ||||| | ||||| || Sbjct 55710250 TTTATGATACTATGTAATTTGTGCAACCAGATGTGTATACAATATGCATGGGATTGGCTA 55710309 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| |||||| || |||| | | ||||||||||||||||||||||||||||||| Sbjct 55710310 CTTCAATAGGATCTTTTCTCCTAGCCAGAGGAGAAATTACCAAACGTCTAGCATTCCC 55710367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19046184597120