Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 6e-17 seq9 98.7 6e-17 seq8 98.7 6e-17 seq1 98.7 6e-17 seq12 95.1 7e-16 seq6 95.1 7e-16 seq7 78.8 5e-11 >seq10 Length=62175169 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6687757 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 6687816 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 6687817 GTATTAGCTCT 6687827 Score = 82.4 bits (90), Expect = 4e-12 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 44228313 GACCTTTTATCTAATAAATGCATCC-TTCCAGAAGTCGGAGTTTGTTGCACG 44228263 >seq9 Length=70713020 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 43446186 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 43446127 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43446126 GTATTAGCTCT 43446116 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 43528529 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 43528470 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43528469 GTATTAGCTCT 43528459 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 43648948 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 43648889 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43648888 GTATTAGCTCT 43648878 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 43662401 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 43662342 Query 8909 GCTCT 8913 ||||| Sbjct 43662341 GCTCT 43662337 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 43462185 GCTCGCATCGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCAC 43462126 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43462125 GTATTAGCTCT 43462115 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 43511129 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGATTGTTGCAC 43511070 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43511069 GTATTAGCTCT 43511059 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 43536349 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGATTGTTGCAC 43536290 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43536289 GTATTAGCTCT 43536279 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 43639440 GCCCGCGTCGATCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 43639381 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43639380 GTATTAGCTCT 43639370 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 43482607 GTCGACCTTTTATCTAATAAATGCATCCGTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 43482548 Query 8909 GCTCT 8913 ||||| Sbjct 43482547 GCTCT 43482543 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 43433115 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCCTCCAGAAGTCGAGGTTTGTTGCAC 43433056 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43433055 GTATTAGCTCT 43433045 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 43689511 GCCCGCGTCGACCTTTTATCTAATAAATGTATCCCTTCCAGAAGTCGGGGTTTGTTGAAC 43689452 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43689451 GTATTAGCTCT 43689441 Score = 87.8 bits (96), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||| Sbjct 43571288 GACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCAGGGTTTGTTGCACGTATTAGCT 43571229 Query 8912 CT 8913 || Sbjct 43571228 CT 43571227 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||| ||||||||||||||||| |||||| |||||||||||||| Sbjct 43674997 GCCCGCGTCGACCTTTTATCCAATAAATGCATCCCTTCTAGAAGTTGGGGTTTGTTGCAC 43674938 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43674937 GTATTAGCTCT 43674927 Score = 80.6 bits (88), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||| | ||||| |||||||||||| Sbjct 43313337 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCTAAAAGTCAAGGTTTGTTGCAC 43313278 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43313277 GTATTAGCTCT 43313267 >seq8 Length=57128820 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20941858 GCCCGTGTCCACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 20941799 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 20941798 GTATTAGCTCT 20941788 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20977366 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 20977307 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 20977306 GTATTAGCTCT 20977296 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 20954714 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGAGGTTTGTTGCAC 20954655 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 20954654 GTATTAGCTCT 20954644 Score = 95.1 bits (104), Expect = 7e-16 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 33258697 CGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTTCAC 33258641 Score = 91.5 bits (100), Expect = 8e-15 Identities = 60/64 (94%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| | Sbjct 20970360 TTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGAGGTTTGTTGCACGTATTAG 20970301 Query 8910 CTCT 8913 |||| Sbjct 20970300 CTCT 20970297 Score = 89.7 bits (98), Expect = 3e-14 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 20875569 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCAAGGTTTGTTGCAC 20875510 Query 8905 G--ATTGCTCT 8913 | ||||||| Sbjct 20875509 GTATTTGCTCT 20875499 Score = 89.7 bits (98), Expect = 3e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 32723329 GTGTCAACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTTGGGGTTTGTTGCACG 32723273 Score = 87.8 bits (96), Expect = 1e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 || || ||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 20820570 CGCGTCGACCTTTTATCTAATAAATGCATCCGTTCCAGAAGTCGGTGTTTGTTGCACG 20820627 Score = 86.0 bits (94), Expect = 4e-13 Identities = 57/61 (93%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| Sbjct 20906006 ACCTTTTATCTAATAAATATATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTC 20905947 Query 8913 T 8913 | Sbjct 20905946 T 20905946 >seq1 Length=55868233 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55508724 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55508783 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55508784 GTATTAGCTCT 55508794 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55536911 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55536970 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55536971 GTATTAGCTCT 55536981 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55549506 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55549565 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55549566 GTATTAGCTCT 55549576 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55558891 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55558950 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55558951 GTATTAGCTCT 55558961 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 55571523 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 55571582 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 55571583 TTAGCTCT 55571590 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55580979 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55581038 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55581039 GTATTAGCTCT 55581049 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55590393 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55590452 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55590453 GTATTAGCTCT 55590463 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55610205 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55610264 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55610265 GTATTAGCTCT 55610275 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55619689 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55619748 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55619749 GTATTAGCTCT 55619759 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55629181 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55629240 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55629241 GTATTAGCTCT 55629251 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55642267 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55642326 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55642327 GTATTAGCTCT 55642337 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55651692 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55651751 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55651752 GTATTAGCTCT 55651762 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55664074 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55664133 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55664134 GTATTAGCTCT 55664144 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55673533 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55673592 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55673593 GTATTAGCTCT 55673603 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55682857 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55682916 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55682917 GTATTAGCTCT 55682927 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55692354 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55692413 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55692414 GTATTAGCTCT 55692424 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55701191 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55701250 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55701251 GTATTAGCTCT 55701261 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55709482 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55709541 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55709542 GTATTAGCTCT 55709552 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55717728 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55717787 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55717788 GTATTAGCTCT 55717798 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55733358 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55733417 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55733418 GTATTAGCTCT 55733428 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55744629 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55744688 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55744689 GTATTAGCTCT 55744699 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55754084 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55754143 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55754144 GTATTAGCTCT 55754154 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55763282 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55763341 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55763342 GTATTAGCTCT 55763352 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55770660 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55770719 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55770720 GTATTAGCTCT 55770730 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55783777 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55783836 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55783837 GTATTAGCTCT 55783847 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55793269 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55793328 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55793329 GTATTAGCTCT 55793339 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55802769 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55802828 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55802829 GTATTAGCTCT 55802839 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55811912 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55811971 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55811972 GTATTAGCTCT 55811982 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55821326 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55821385 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55821386 GTATTAGCTCT 55821396 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55840028 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55840087 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55840088 GTATTAGCTCT 55840098 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55865192 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 55865251 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55865252 GTATTAGCTCT 55865262 Score = 82.4 bits (90), Expect = 4e-12 Identities = 64/71 (90%), Gaps = 4/71 (6%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 55527612 GCCCGCGTCGACCTTTTATCTA-TAAATGCATCCCTTCCAGAAGTC-GGGTTTGTTGCAC 55527669 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 55527670 GTATTAGCTCT 55527680 >seq12 Length=35429946 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 34123732 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGATTGTTGCAC 34123791 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 34123792 GTATTAGCTCT 34123802 >seq6 Length=51074515 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 5083829 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTAGGGGTTTGTTGCAC 5083770 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 5083769 GTATTAGCTCT 5083759 >seq7 Length=60982465 Score = 78.8 bits (86), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||| ||| | |||||| ||||||||||||| ||| Sbjct 38107685 GTCGACCTTTTATCTAATAAATGCATCCTTTCTAAAAGTCGAGGTTTGTTGCACGTATTA 38107626 Query 8909 GCTCT 8913 ||||| Sbjct 38107625 GCTCT 38107621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406069562552