Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq404 145 3e-31 seq297 145 3e-31 seq127 145 3e-31 seq4150 120 1e-23 seq633 100 1e-17 seq1 95.1 5e-16 seq86 87.8 7e-14 >seq404 Length=1096556 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||||||||| | |||||||| | Sbjct 564863 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAAACAGTATGCATGGGATTAGCTG 564922 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| Sbjct 564923 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAAAAATTACCAAACGTTTAGCATTCCC 564980 >seq297 Length=1327353 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||||||||| | |||||||| | Sbjct 1088562 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAAACAGTATGCATGGGATTAGCTG 1088621 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| Sbjct 1088622 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAAAAATTACCAAACGTTTAGCATTCCC 1088679 >seq127 Length=2087338 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||||||||| | |||||||| | Sbjct 691270 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAAACAGTATGCATGGGATTAGCTG 691211 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| Sbjct 691210 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAAAAATTACCAAACGTTTAGCATTCCC 691153 >seq4150 Length=8774 Score = 120 bits (132), Expect = 1e-23 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| ||||||||||| ||||| ||| || | | ||| ||||| | |||||||| | Sbjct 4338 TTTATAATACTATGCAATTTGTGTGACCCGATGTACAAACAATATGCATGGGATTAGCTG 4397 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 ||||||| |||||| |||| |||||||||||| |||||||||||| | |||||||| Sbjct 4398 CTTCAATAGGATCTTTTATTCTGGTCGGAGGAAAAATTACCAAACATTTAGCATTC 4453 >seq633 Length=728922 Score = 100 bits (110), Expect = 1e-17 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| || || | | | ||||||| | |||||||| Sbjct 353579 TTTATGATACTATGCAATTTGTGTGACTTGATGTACAAATAGTATGCATGGGATTAGCTA 353520 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||| | |||| |||||| ||||| ||||||||||| || | || ||||| Sbjct 353519 CTTTAATGGGATATCTTATTCTGGTCAGAGGAAAAATTACCAAATGTTTGGCTTTCCC 353462 >seq1 Length=6409783 Score = 95.1 bits (104), Expect = 5e-16 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 6 TGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTC 65 ||||||||||||| |||||| ||| || | | ||||||||| | |||||||| |||| Sbjct 783396 TGATACTATGCAATTTGTGCGACCCGATGTACAAACAGTATGCATGGGATTAGCTACTTC 783455 Query 66 AATGGGATCTGTTATCCTGGTCGGAGGAGA 95 |||||||| | |||| |||||||||||||| Sbjct 783456 AATGGGATTTTTTATTCTGGTCGGAGGAGA 783485 Score = 78.8 bits (86), Expect = 4e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||||||||| | |||||||| Sbjct 783323 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAAACAGTATGCATGGGATTAGCTA 783382 Query 62 CTTCAATGGGATCTGTTA 79 |||||||||||| || || Sbjct 783383 CTTCAATGGGATTTGATA 783400 >seq86 Length=2504378 Score = 87.8 bits (96), Expect = 7e-14 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 40 ACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATT 99 ||| | ||| | |||||||| |||| |||||||||| |||| ||||||||||| ||||| Sbjct 814527 ACAATGTGCATGGGATTAGCTGCTTTAATGGGATCTTTTATTTTGGTCGGAGGA-AAATT 814469 Query 100 ACCAAACGTCTAGCATTCCC 119 ||||||||| ||| |||||| Sbjct 814468 ACCAAACGTTTAGTATTCCC 814449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19044847599360