Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq957 98.7 6e-17 seq842 98.7 6e-17 seq354 98.7 6e-17 seq94 98.7 6e-17 seq59 98.7 6e-17 seq49 98.7 6e-17 seq114 82.4 4e-12 seq515 80.6 2e-11 seq313 80.6 2e-11 seq2 80.6 2e-11 >seq957 Length=373148 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 209281 GCTCGCATCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 209340 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 209341 GTATTAGCTCT 209351 Score = 91.5 bits (100), Expect = 8e-15 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 220682 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCGAGAAGTCGGGGTTTGTTGCAC 220741 >seq842 Length=479921 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365097 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 365156 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 365157 GTATTAGCTCT 365167 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 415671 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCAAGAAGTCAAGGTTTGTTGCAC 415730 Query 8905 GATT 8908 | || Sbjct 415731 GTTT 415734 >seq354 Length=1203325 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411735 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 411794 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 411795 GTATTAGCTCT 411805 >seq94 Length=2365428 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1591981 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 1592040 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1592041 GTATTAGCTCT 1592051 >seq59 Length=2824927 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 688776 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 688717 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 688716 GTATTAGCTCT 688706 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776992 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 776933 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 776932 GTATTAGCTCT 776922 >seq49 Length=2931737 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2689657 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2689716 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2689717 GTATTAGCTCT 2689727 >seq114 Length=2223408 Score = 82.4 bits (90), Expect = 4e-12 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||| | |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1173590 TTGATCGTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCAC 1173642 Score = 82.4 bits (90), Expect = 4e-12 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||| | |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1240841 TTGATCGTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCAC 1240893 >seq515 Length=902303 Score = 80.6 bits (88), Expect = 2e-11 Identities = 51/54 (94%), Gaps = 1/54 (2%) Strand=Plus/Plus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 36017 TGTTGAC-TTTTATCTAATAAATGCATCTCTTCCAGAAGTCGAGGTTTGTTGCA 36069 >seq313 Length=1292213 Score = 80.6 bits (88), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct 504097 GCCCGAGTCGACCTTTGTTCTAATAAATGCATCCCTTCCAGAAGCCAGGGTTTGTTGCAC 504038 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 504037 GTATTAGCTCT 504027 >seq2 Length=6295133 Score = 80.6 bits (88), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||| ||||||||||||||||| ||||||| || ||||||||||| Sbjct 4463542 GCCCGCGTCGACCTTTTATTTAATAAATGCATCCCTTTCAGAAGTTGGAGTTTGTTGCAC 4463601 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4463602 GTATTAGCTCT 4463612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28404018549456