Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq2229 154 6e-34 seq6656 123 9e-25 seq21 123 9e-25 >seq2229 Length=174466 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | ||||| |||| Sbjct 84217 TTTATGATACTATGCAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCCG 84158 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 84157 CTTCAATGGGATCTTTTCTCCTGGCCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 84100 >seq6656 Length=138136 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| ||| || |||||| |||||| | | |||| ||||| | ||||| ||| Sbjct 82677 TTTATGATATTATATAATTTGTGCAACCAGATGTGCATACAATATGCATGGGATTGGCCA 82736 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| || |||||||| |||| |||||||||||||||||| ||||||| Sbjct 82737 TTTCAATGGGATCTTTTCTCCTGGTCAGAGGGGAAATTACCAAACGTCTAACATTCCC 82794 >seq21 Length=763360 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||||||||||||| |||| | | | |||| ||||| | ||||| | | Sbjct 347932 TTTATGATACTATGCAAATTGTGCAACCAAACGTGCATACATTATGCATGGGATTGACTG 347991 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||| | || ||| || | || ||||||||||||||| |||||||||||| Sbjct 347992 CTTCAATGGGATATTTTCTCCCGGCCAGAAGAGAAATTACCAAACTTCTAGCATTCCC 348049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19030257699840