Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq6932 100 2e-17 seq1158 89.7 3e-14 seq8259 86.0 4e-13 seq1580 86.0 4e-13 seq16027 84.2 1e-12 seq15058 84.2 1e-12 seq27 84.2 1e-12 seq5144 82.4 4e-12 >seq6932 Length=80499 Score = 100 bits (110), Expect = 2e-17 Identities = 62/64 (97%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 62924 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAG 62983 Query 8910 CTCT 8913 |||| Sbjct 62984 CTCT 62987 >seq1158 Length=230865 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 138492 GCCCGTGTCGACCTTTTATCTAATAAATGTATCCCTTTTAGAAGTCGGGGTTTGTTGCAC 138551 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 138552 GTATTAGCTCT 138562 >seq8259 Length=63958 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||| |||||||||||| ||||||||||||||||| ||| Sbjct 29680 GCTCGCGTCGACCTTTTATCTAATTAATGCATCCCTTTTAGAAGTCGGGGTTTGTTACAC 29621 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 29620 GTATTAGCTCT 29610 >seq1580 Length=213467 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 200316 GCCCGCGTCGACCTTTTATCTAATAAATGTATCCCTTTTAGAAGTCGGGGTTTGTTGCAC 200375 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 200376 GTATTAGCTCT 200386 >seq16027 Length=16755 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||||||| | ||||||||||| |||||| |||||| Sbjct 14654 GCCCGTGTCGACCTTTTATCTAATAAATGCATTCTTTCCAGAAGTCAGGGTTTATTGCAC 14595 Query 8905 G 8905 | Sbjct 14594 G 14594 >seq15058 Length=20236 Score = 84.2 bits (92), Expect = 1e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || || ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| Sbjct 15124 GTCGAGCTTTTATCTAATAAATGAATCCCTTCCAGAAGTCGGGGTTTGTTGTACGTATTA 15065 Query 8909 GCTCT 8913 ||||| Sbjct 15064 GCTCT 15060 >seq27 Length=1457134 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||| |||||||||||||||| |||||||||| || Sbjct 11003 GCCCGCGTCGACCTTTTATCTAATAAATGAATCCCTTCCAGAAGTCAGGGTTTGTTGTAC 11062 Query 8905 G 8905 | Sbjct 11063 G 11063 Score = 80.6 bits (88), Expect = 2e-11 Identities = 56/61 (92%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||| |||| Sbjct 58900 ACCTTTTATCTAATAAATGAATCCCTTCCAAAAGTCGAGGTTTGTTGCACGTATTAGCTC 58959 Query 8913 T 8913 | Sbjct 58960 T 58960 Score = 78.8 bits (86), Expect = 5e-11 Identities = 56/62 (90%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||| ||| Sbjct 52925 GACCTTTTATCTAATAAATACATCCCTTTCAGAAGTCAGGGTTTGTTGCGCGTATTAGCT 52984 Query 8912 CT 8913 || Sbjct 52985 CT 52986 Score = 78.8 bits (86), Expect = 5e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||||||||||||||||||||||||| ||||||||||| || ||||||| Sbjct 105847 ACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGATTATTGCACG 105897 >seq5144 Length=101306 Score = 82.4 bits (90), Expect = 4e-12 Identities = 60/66 (91%), Gaps = 3/66 (5%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTC-GGGGTTTGTTGCACG-ATT 8908 || || |||||||||||||||||||||||||||||||||| |||||||||| |||| ||| Sbjct 69208 GTCGATCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGGTTTGTTACACGTATT 69267 Query 8909 -GCTCT 8913 ||||| Sbjct 69268 AGCTCT 69273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28381637004864