Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq132374 159 1e-35 seq131886 159 1e-35 seq129442 159 1e-35 seq114525 159 1e-35 seq114225 159 1e-35 seq112520 159 1e-35 seq109811 159 1e-35 seq109007 159 1e-35 seq108382 159 1e-35 seq108044 159 1e-35 seq93307 159 1e-35 seq89500 159 1e-35 seq74867 159 1e-35 seq39343 138 4e-29 seq119376 136 2e-28 seq71001 84.2 8e-13 >seq132374 Length=258849 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 92595 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 92654 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 92655 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 92712 >seq131886 Length=114425 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 19356 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 19415 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 19416 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 19473 >seq129442 Length=72352 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 43305 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 43246 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 43245 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 43188 >seq114525 Length=33509 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 28337 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 28278 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 28277 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 28220 >seq114225 Length=40238 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 35055 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 35114 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 35115 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 35172 >seq112520 Length=31308 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 11729 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 11670 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 11669 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 11612 >seq109811 Length=69488 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 66719 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 66778 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 66779 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 66836 >seq109007 Length=27567 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 8833 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 8892 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 8893 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 8950 >seq108382 Length=26939 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 12087 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 12146 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 12147 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 12204 >seq108044 Length=77614 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 59799 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 59740 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 59739 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 59682 >seq93307 Length=16475 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 3631 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 3572 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 3571 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 3514 >seq89500 Length=14527 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 12869 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 12810 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 12809 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 12752 >seq74867 Length=8764 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 4178 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 4119 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 4118 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 4061 >seq39343 Length=2624 Score = 138 bits (152), Expect = 4e-29 Identities = 102/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | ||| | | | Sbjct 795 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGAGAT-ACCTG 737 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 736 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 679 >seq119376 Length=40493 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || || ||| || ||| || | ||| ||||| | |||||||| | Sbjct 9214 TTTATGATACTATGAAATTTTTGCAACTAGACATACAAACAATATGCATGGGATTAGCTG 9273 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct 9274 CTTCAATGGGATCTTTTATCTTGGTCAGAGGAGAAATTACCAAATGTCTAGCATTCCC 9331 >seq71001 Length=7386 Score = 84.2 bits (92), Expect = 8e-13 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | ||||||| | Sbjct 4660 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGTTG 4719 Query 62 CTTCAATGGGATCTGTTAT 80 |||||||||||||| |||| Sbjct 4720 CTTCAATGGGATCTTTTAT 4738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19018802599680