Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq4770 98.7 6e-17 seq1910 98.7 6e-17 seq16262 96.9 2e-16 seq9567 96.9 2e-16 seq9332 96.9 2e-16 seq118 96.9 2e-16 seq9810 95.1 7e-16 seq9217 95.1 7e-16 seq8704 95.1 7e-16 seq7382 95.1 7e-16 seq6277 95.1 7e-16 seq6242 95.1 7e-16 seq5707 95.1 7e-16 seq25772 93.3 2e-15 seq5969 93.3 2e-15 seq8471 87.8 1e-13 seq6833 86.0 4e-13 >seq4770 Length=2644 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 95 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 94 GTATTAGCTCT 84 >seq1910 Length=10376 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10293 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 10234 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 10233 GTATTAGCTCT 10223 >seq16262 Length=2825 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2664 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 2723 Query 8909 GCTCT 8913 ||||| Sbjct 2724 GCTCT 2728 >seq9567 Length=2694 Score = 96.9 bits (106), Expect = 2e-16 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2601 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2542 Query 8905 G 8905 | Sbjct 2541 G 2541 >seq9332 Length=2691 Score = 96.9 bits (106), Expect = 2e-16 Identities = 60/62 (97%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 2 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCT 61 Query 8912 CT 8913 || Sbjct 62 CT 63 >seq118 Length=10061 Score = 96.9 bits (106), Expect = 2e-16 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 94 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 153 Query 8905 G 8905 | Sbjct 154 G 154 >seq9810 Length=10866 Score = 95.1 bits (104), Expect = 7e-16 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8311 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8252 >seq9217 Length=2690 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2651 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAGGTCGGGGTTTGTTGCAC 2592 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2591 GTATTAGCTCT 2581 >seq8704 Length=2685 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 75 GCCCGCGTCGACCTTTTATTTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 16 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 15 GTATTAGCTCT 5 >seq7382 Length=2670 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2547 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGATGTCGGGGTTTGTTGCAC 2606 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2607 GTATTAGCTCT 2617 >seq6277 Length=2659 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2590 GCCCGCGTCGACTTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2531 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2530 GTATTAGCTCT 2520 >seq6242 Length=2659 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2622 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGGCGGGGTTTGTTGCAC 2563 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2562 GTATTAGCTCT 2552 >seq5707 Length=2654 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2530 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAATCGGGGTTTGTTGCAC 2589 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2590 GTATTAGCTCT 2600 >seq25772 Length=11745 Score = 93.3 bits (102), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2547 GCCCGCGTCGACCTTTTATCTAAGAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2606 Query 8905 G 8905 | Sbjct 2607 G 2607 >seq5969 Length=2656 Score = 93.3 bits (102), Expect = 2e-15 Identities = 63/68 (93%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || ||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 2540 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCACGTA 2599 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 2600 TTAGCTCT 2607 >seq8471 Length=2682 Score = 87.8 bits (96), Expect = 1e-13 Identities = 55/57 (96%), Gaps = 2/57 (4%) Strand=Plus/Minus Query 8859 TTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 163 TTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 107 >seq6833 Length=2665 Score = 86.0 bits (94), Expect = 4e-13 Identities = 54/56 (96%), Gaps = 2/56 (4%) Strand=Plus/Minus Query 8860 TTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 2665 TTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 2610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28381665127200