Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq6024 154 6e-34 seq972 78.8 4e-11 >seq6024 Length=163856 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||||||||| | |||||||| | Sbjct 77296 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAGTATGCATGGGATTAGCTG 77237 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| Sbjct 77236 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAAAAATTACCAAACGTTTAGCATTCCC 77179 >seq972 Length=662790 Score = 78.8 bits (86), Expect = 4e-11 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 67 ATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| ||||||||||||||||| ||||||||||| || |||||||||| Sbjct 553351 ATGGGATCTTTTATCCTGGTCGGAGGAAAAATTACCAAATGTTTAGCATTCCC 553299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045145080320