Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq3257 165 3e-37 seq192261 95.1 5e-16 seq90007 87.8 7e-14 seq519139 80.6 1e-11 >seq3257 Length=9623 Score = 165 bits (182), Expect = 3e-37 Identities = 108/119 (91%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 |||||||||||||||||| |||||| |||||| | | |||| ||||| | |||| |||| Sbjct 2405 CTTTATGATACTATGCAATTTGTGCAACCAGATGTACATACAATATGCATGGGATCAGCC 2346 Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2345 GCTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 2287 >seq192261 Length=1695 Score = 95.1 bits (104), Expect = 5e-16 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 46 TGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAA 105 ||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 TGCATGGGATCAGCCGCTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAA 60 Query 106 CG 107 || Sbjct 61 CG 62 >seq90007 Length=2939 Score = 87.8 bits (96), Expect = 7e-14 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 67 ATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2082 ATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACTAAACGTCTAGCATTCCC 2030 >seq519139 Length=576 Score = 80.6 bits (88), Expect = 1e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 1 CTTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 |||||||||||||||||| |||||| |||||| | | |||| ||||| | |||| |||| Sbjct 351 CTTTATGATACTATGCAATTTGTGCAACCAGATGTACATACAATATGCATGGGATCAGCC 292 Query 61 GCTTCAATG 69 ||||||||| Sbjct 291 GCTTCAATG 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18863888764800