Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq603567 93.3 2e-15 seq44589 80.6 1e-11 >seq603567 Length=475 Score = 93.3 bits (102), Expect = 2e-15 Identities = 53/54 (98%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 119 >seq44589 Length=4249 Score = 80.6 bits (88), Expect = 1e-11 Identities = 59/65 (91%), Gaps = 3/65 (5%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 2238 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAA-ACCGGGTTTGTTGCACGTATTA 2296 Query 8909 GCTCT 8913 ||||| Sbjct 2297 GCTCT 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28126419775080