Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq26342 95.1 7e-16 seq28434 89.7 3e-14 seq16638 89.7 3e-14 >seq26342 Length=6631 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 758 GCCCGCGTTGACCTTTTATCTAATAAATGCGCCCCTTCCAGAAGTCGGGGTTTGTTGCAC 699 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 698 GTATTAGCTCT 688 >seq28434 Length=7437 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||||||| ||||||||||||||||| |||||| |||||||| |||||||||||| Sbjct 3901 GCTCGTGTTGACATTTTATCTAATAAATGCGCCCCTTCAAGAAGTCGAGGTTTGTTGCAC 3842 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 3841 GTATTAGCTCT 3831 >seq16638 Length=12074 Score = 89.7 bits (98), Expect = 3e-14 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 11803 GCCCGCGTTGACCTTTTATCTAATAAATGCGCCCCTTCCAGAAGTCGGGGTTTGTTGCAA 11862 Query 8905 GA 8906 || Sbjct 11863 GA 11864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28390933673916