Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq22381 100 2e-17 seq40944 93.3 2e-15 seq40921 93.3 2e-15 seq968 93.3 2e-15 seq40945 89.7 3e-14 seq9809 84.2 1e-12 >seq22381 Length=2515 Score = 100 bits (110), Expect = 2e-17 Identities = 64/67 (96%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 751 GTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTAT 810 Query 8908 T-GCTCT 8913 | ||||| Sbjct 811 TAGCTCT 817 >seq40944 Length=45302 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 42831 GTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 42890 Query 8909 GCTCT 8913 ||||| Sbjct 42891 GCTCT 42895 >seq40921 Length=111058 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 27870 GTCGACCTTCTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 27929 Query 8909 GCTCT 8913 ||||| Sbjct 27930 GCTCT 27934 >seq968 Length=8291 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 7977 GTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 7918 Query 8909 GCTCT 8913 ||||| Sbjct 7917 GCTCT 7913 >seq40945 Length=12103 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| Sbjct 7205 ACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTC 7264 Query 8913 T 8913 | Sbjct 7265 T 7265 >seq9809 Length=1988 Score = 84.2 bits (92), Expect = 1e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||| Sbjct 1289 GTTGACCTTTTATCTAATAAATGTATCACTTCCAGAAGTCGGAGTTTGTTACACGTATTA 1348 Query 8909 GCTCT 8913 ||||| Sbjct 1349 GCTCT 1353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28392190550592