Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq2981 127 8e-26 seq3 127 8e-26 seq2 122 3e-24 seq1 105 3e-19 seq9 104 9e-19 seq4 87.8 7e-14 >seq2981 Length=38664 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| | | ||||||||| | |||||||| | Sbjct 16550 TTTATGATACTATGCAATTTGTACAACCAGATGTACAAACAGTATGCATGGGATTAGCTG 16609 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| |||| ||| ||||| ||||||||||||||||||||||| || Sbjct 16610 CTTCAATGGGATCCTTTATTTTGGCAGGAGGCGAAATTACCAAACGTCTAGCATTTCC 16667 >seq3 Length=30153019 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| | | ||||||||| | |||||||| | Sbjct 20151490 TTTATGATACTATGCAATTTGTACAACCAGATGTACAAACAGTATGCATGGGATTAGCTG 20151431 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| |||| ||| ||||| ||||||||||||||||||||||| || Sbjct 20151430 CTTCAATGGGATCCTTTATTTTGGCAGGAGGCGAAATTACCAAACGTCTAGCATTTCC 20151373 >seq2 Length=24697652 Score = 122 bits (134), Expect = 3e-24 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5 ATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTT 64 |||||||||||||| |||| | |||||| | | ||||||||| | |||||||| |||| Sbjct 13709328 ATGATACTATGCAATTTGTACAACCAGATGTACAAACAGTATGCATGGGATTAGCTGCTT 13709269 Query 65 CAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||| |||| ||| ||||| ||||||||||||||||||||||| || Sbjct 13709268 CAATGGGATCCTTTATTTTGGCAGGAGGCGAAATTACCAAACGTCTAGCATTTCC 13709214 >seq1 Length=36457581 Score = 105 bits (116), Expect = 3e-19 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| |||| || |||| | || ||| | | ||| ||||| | || ||||| | Sbjct 14278269 TTTATGATAGTATGAAATTTGTACAACTAGATGTACAAACATTATGCATGGGGTTAGCTG 14278210 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| |||| ||| ||||| ||||||||||||||||||||||| || Sbjct 14278209 CTTCAATGGGATCCATTATTTTGGGAGGAGGCGAAATTACCAAACGTCTAGCATTACC 14278152 >seq9 Length=21753712 Score = 104 bits (114), Expect = 9e-19 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||| | |||||| | | ||| ||||| |||||||||| Sbjct 7689654 TTTATGATACGATGCAATTTGTACAACCAGATGTACAAACAATATGCATAGGATTAGCTT 7689595 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||||||| ||||| |||| ||| | ||| |||||||||||||||||||||| Sbjct 7689594 CTTCAATAGGATCCATTATTTTGGGAGTAGGCAAAATTACCAAACGTCTAGCATT 7689540 >seq4 Length=27333975 Score = 87.8 bits (96), Expect = 7e-14 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 27 ACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGT 86 |||||| | | ||| ||||| | |||||||| ||||||||||| || |||| ||| Sbjct 16372617 ACCAGATGTACAAACAATATGCATGGGATTAGCTGCTTCAATGGGTTCCTTTATTTTGGC 16372676 Query 87 CGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||| ||||||||||||||||||||||| || Sbjct 16372677 AGGAGGCGAAATTACCAAACGTCTAGCATTTCC 16372709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19043572472640