Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq11 161 4e-36 seq4 87.8 7e-14 >seq11 Length=35299535 Score = 161 bits (178), Expect = 4e-36 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| || | ||| ||||| | |||||||||| Sbjct 33687530 TTTATGATACTATGCAATTTGTGCGACCAGATATACAGACAATATGCATGGGATTAGCCG 33687589 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| Sbjct 33687590 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACRTCTAGCATTCCC 33687647 >seq4 Length=23020739 Score = 87.8 bits (96), Expect = 7e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCC 118 ||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||| Sbjct 11159302 GCTTCAATGGGATTTTTTATTCTGGTCGGAGGAGAAATTACGAAACGTCTAGCATTCC 11159359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19046139391680