Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq1187 95.1 7e-16 seq1149 95.1 7e-16 seq1000 95.1 7e-16 seq435 95.1 7e-16 seq379 95.1 7e-16 seq186 95.1 7e-16 seq111 95.1 7e-16 seq13 95.1 7e-16 seq10 95.1 7e-16 seq7 95.1 7e-16 seq4 95.1 7e-16 seq763 93.3 2e-15 seq424 93.3 2e-15 seq5 82.4 4e-12 >seq1187 Length=9248449 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2363149 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2363208 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2363209 GTATTAGCTCT 2363219 >seq1149 Length=312252 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 174907 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 174848 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 174847 GTATTAGCTCT 174837 >seq1000 Length=1917005 Score = 95.1 bits (104), Expect = 7e-16 Identities = 62/66 (94%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT 8908 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct 1098284 TGTTGACCTTTTATCTAATAAATGCATCCATTCTAGAAGTCGGGGTTTGTTGCACGTATT 1098225 Query 8909 -GCTCT 8913 ||||| Sbjct 1098224 AGCTCT 1098219 >seq435 Length=330949 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 128364 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 128305 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 128304 GTATTAGCTCT 128294 >seq379 Length=9387712 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2369317 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2369258 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2369257 GTATTAGCTCT 2369247 >seq186 Length=618578 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 186463 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 186522 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 186523 GTATTAGCTCT 186533 >seq111 Length=1131199 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 232091 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 232150 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 232151 GTATTAGCTCT 232161 >seq13 Length=34719086 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2713165 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2713224 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2713225 GTATTAGCTCT 2713235 >seq10 Length=33391235 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 19186633 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 19186692 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 19186693 GTATTAGCTCT 19186703 >seq7 Length=26383534 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 19451197 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 19451256 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 19451257 GTATTAGCTCT 19451267 Score = 87.8 bits (96), Expect = 1e-13 Identities = 65/72 (90%), Gaps = 3/72 (4%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAA-TAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || || || |||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 6527111 GCCCGCGTCGACCTTTTATCTAAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCA 6527052 Query 8904 CG-ATT-GCTCT 8913 || ||| ||||| Sbjct 6527051 CGTATTAGCTCT 6527040 >seq4 Length=23020739 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 21905914 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 21905973 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 21905974 GTATTAGCTCT 21905984 >seq763 Length=1977785 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 769827 GTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 769886 Query 8909 GCTCT 8913 ||||| Sbjct 769887 GCTCT 769891 >seq424 Length=6818780 Score = 93.3 bits (102), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3109759 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 3109700 Query 8905 G 8905 | Sbjct 3109699 G 3109699 >seq5 Length=31606955 Score = 82.4 bits (90), Expect = 4e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 | ||||||||||||||||||| |||||| ||||| ||||||||||||||||| Sbjct 27199989 GWCCTTTTATCTAATAAATGCGTCCCTTYCAGAAKTCGGGGTTTGTTGCACG 27200040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406000215428