Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq2187 134 5e-28 seq4 134 5e-28 seq1 118 4e-23 seq8 80.6 1e-11 >seq2187 Length=124033 Score = 134 bits (148), Expect = 5e-28 Identities = 98/114 (86%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 TGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTC 65 ||||| ||||||| |||| | ||||| | | |||||||||||||||| |||||||||| Sbjct 54585 TGATATTATGCAAGTTGTAGAAGCAGAAGTACATACAGTATGCGTAGGACTAGCCGCTTC 54644 Query 66 AATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||| || | |||||||||| ||| |||||||||||||||||||||| Sbjct 54645 AATGGGATCTCTTCTTTTGGTCGGAGGGGAATTTACCAAACGTCTAGCATTCCC 54698 >seq4 Length=56582383 Score = 134 bits (148), Expect = 5e-28 Identities = 98/114 (86%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 6 TGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTC 65 ||||| ||||||| |||| | ||||| | | |||||||||||||||| |||||||||| Sbjct 18333153 TGATATTATGCAAGTTGTAGAAGCAGAAGTACATACAGTATGCGTAGGACTAGCCGCTTC 18333094 Query 66 AATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||| || | |||||||||| ||| |||||||||||||||||||||| Sbjct 18333093 AATGGGATCTCTTCTTTTGGTCGGAGGGGAATTTACCAAACGTCTAGCATTCCC 18333040 >seq1 Length=52991155 Score = 118 bits (130), Expect = 4e-23 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 6 TGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTC 65 ||||| ||||||| |||| | ||||| | | |||||||||||||||| |||||||||| Sbjct 30691327 TGATATTATGCAAGTTGTAGAAGCAGAAGTACATACAGTATGCGTAGGACTAGCCGCTTC 30691268 Query 66 AATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCT 110 |||||||||| || | |||||||||| ||| ||||||||||||| Sbjct 30691267 AATGGGATCTCTTCTTTTGGTCGGAGGGGAATTTACCAAACGTCT 30691223 Score = 111 bits (122), Expect = 6e-21 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 29 CAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCG 88 ||||| | | |||| ||||||||| |||||||||||||||| ||||| || | |||| | Sbjct 35632393 CAGAAGTACATACAATATGCGTAGAATTAGCCGCTTCAATGTGATCTCTTCTTTTGGTTG 35632452 Query 89 GAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| |||||||||||||||||||||| Sbjct 35632453 GAGGAGAATTTACCAAACGTCTAGCATTCCC 35632483 >seq8 Length=45569985 Score = 80.6 bits (88), Expect = 1e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 63 TTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| || | |||||||||||||| |||||||||||||||||||||| Sbjct 37250352 TTCAATGGGATCTCTTCTTTTGGTCGGAGGAGAATTTACCAAACGTCTAGCATTCCC 37250296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045944404160