Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq63 93.3 2e-15 seq60 93.3 2e-15 seq29 93.3 2e-15 >seq63 Length=80592 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 51977 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 52036 Query 8909 GCTCT 8913 ||||| Sbjct 52037 GCTCT 52041 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 67512 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 67571 Query 8909 GCTCT 8913 ||||| Sbjct 67572 GCTCT 67576 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 70432 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 70491 Query 8909 GCTCT 8913 ||||| Sbjct 70492 GCTCT 70496 >seq60 Length=84534 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 4524 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 4583 Query 8909 GCTCT 8913 ||||| Sbjct 4584 GCTCT 4588 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 19004 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 19063 Query 8909 GCTCT 8913 ||||| Sbjct 19064 GCTCT 19068 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 28276 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 28335 Query 8909 GCTCT 8913 ||||| Sbjct 28336 GCTCT 28340 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 48884 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 48943 Query 8909 GCTCT 8913 ||||| Sbjct 48944 GCTCT 48948 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 51476 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 51535 Query 8909 GCTCT 8913 ||||| Sbjct 51536 GCTCT 51540 Score = 78.8 bits (86), Expect = 5e-11 Identities = 60/66 (91%), Gaps = 4/66 (6%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAA-GTCGGGGTTTGTTGCACG-ATT 8908 || ||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||| Sbjct 26502 GTCGACCTTTTATCTAATAAATGC-TCCCTTCCAAAAGGTCGGGGTTTGTTGCACGTATT 26560 Query 8909 -GCTCT 8913 ||||| Sbjct 26561 AGCTCT 26566 >seq29 Length=181084 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 47146 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 47205 Query 8909 GCTCT 8913 ||||| Sbjct 47206 GCTCT 47210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28405701096036