Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq618 104 1e-18 seq41845 84.2 1e-12 seq22086 82.4 4e-12 seq22084 80.6 2e-11 >seq618 Length=12052 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8736 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8677 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 8676 GTATTAGCTCT 8666 >seq41845 Length=5927 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||| |||||||||||||||||||| |||| || ||||||||||| Sbjct 4083 GCCCGTGTCGACCTTTTATGTAATAAATGCATCCCTTCCAAAAGTTGGAGTTTGTTGCAC 4142 Query 8905 G 8905 | Sbjct 4143 G 4143 >seq22086 Length=781 Score = 82.4 bits (90), Expect = 4e-12 Identities = 55/60 (92%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 371 GCCCGTGTCCACCTTTTATCTAATAAATGCATCCATTCCAGAAGTC-GGGTTTGTTGCAC 429 >seq22084 Length=7242 Score = 80.6 bits (88), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 3271 GCCCGTGTCCACCTTTTATCTAATAA-TGCATCCATTCCAGAAGTCGGGGTTTGTTGCA 3214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28345401374928