Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_001747.1
Length=5987
Score E
Sequences producing significant alignments: (Bits) Value
seq5577 127 8e-26
seq58 118 4e-23
seq77 113 2e-21
seq36248 86.0 2e-13
seq23 82.4 3e-12
>seq5577
Length=3427
Score = 127 bits (140), Expect = 8e-26
Identities = 99/118 (84%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| ||||
Sbjct 674 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 733
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
||||||| | ||| ||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 734 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCC 791
>seq58
Length=3255710
Score = 118 bits (130), Expect = 4e-23
Identities = 97/118 (82%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||| || ||||| |||||| ||| || | | |||| ||||| | ||||||||||
Sbjct 294644 TTTATGAAACCTTGCAATTTGTGCAACCCGATGTGCATACAATATGCATGGGATTAGCCG 294585
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
||||||||| || | ||||| ||| || ||||| |||||||||||||||||||||||
Sbjct 294584 CTTCAATGGCATATTTTATCTTGGCTGGTGGAGAGATTACCAAACGTCTAGCATTCCC 294527
>seq77
Length=8408033
Score = 113 bits (124), Expect = 2e-21
Identities = 95/117 (81%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 4 TATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCT 63
||||||| |||| || |||||| | || | | |||| ||||| | ||||||||||||
Sbjct 3175114 TATGATATTATGGAATTTGTGCAGCTCGACGTGCATACATTATGCATGGGATTAGCCGCT 3175173
Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCG 120
||| |||||||| |||||||||||| |||||||||| |||| ||||||||| |||
Sbjct 3175174 TCATTGGGATCTTTTATCCTGGTCGATGGAGAAATTATCAAAGATCTAGCATTGCCG 3175230
>seq36248
Length=317
Score = 86.0 bits (94), Expect = 2e-13
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| |||||| ||| || | | |||||||||| | ||||||||||
Sbjct 70 TTTATGATACTATGCAATTTGTGCAACCCGATGTGCATACAGTATGCATGGGATTAGCCG 11
Query 62 CTTCAATGGG 71
||||||||||
Sbjct 10 CTTCAATGGG 1
>seq23
Length=5704166
Score = 82.4 bits (90), Expect = 3e-12
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 55 TTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCA 114
||||||| ||||||||||||| ||||||||||||| || | ||||||||| ||||||||
Sbjct 2146927 TTAGCCGTTTCAATGGGATCTTTTATCCTGGTCGGTAGACAGATTACCAAATGTCTAGCA 2146986
Query 115 TTCCC 119
||||
Sbjct 2146987 GTCCC 2146991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19038822151680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |