Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq5577 127 8e-26 seq58 118 4e-23 seq77 113 2e-21 seq36248 86.0 2e-13 seq23 82.4 3e-12 >seq5577 Length=3427 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 674 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 733 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||| ||||||||||||| |||||||||| Sbjct 734 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCC 791 >seq58 Length=3255710 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||| || ||||| |||||| ||| || | | |||| ||||| | |||||||||| Sbjct 294644 TTTATGAAACCTTGCAATTTGTGCAACCCGATGTGCATACAATATGCATGGGATTAGCCG 294585 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| || | ||||| ||| || ||||| ||||||||||||||||||||||| Sbjct 294584 CTTCAATGGCATATTTTATCTTGGCTGGTGGAGAGATTACCAAACGTCTAGCATTCCC 294527 >seq77 Length=8408033 Score = 113 bits (124), Expect = 2e-21 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4 TATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCT 63 ||||||| |||| || |||||| | || | | |||| ||||| | |||||||||||| Sbjct 3175114 TATGATATTATGGAATTTGTGCAGCTCGACGTGCATACATTATGCATGGGATTAGCCGCT 3175173 Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCG 120 ||| |||||||| |||||||||||| |||||||||| |||| ||||||||| ||| Sbjct 3175174 TCATTGGGATCTTTTATCCTGGTCGATGGAGAAATTATCAAAGATCTAGCATTGCCG 3175230 >seq36248 Length=317 Score = 86.0 bits (94), Expect = 2e-13 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | |||||||||| | |||||||||| Sbjct 70 TTTATGATACTATGCAATTTGTGCAACCCGATGTGCATACAGTATGCATGGGATTAGCCG 11 Query 62 CTTCAATGGG 71 |||||||||| Sbjct 10 CTTCAATGGG 1 >seq23 Length=5704166 Score = 82.4 bits (90), Expect = 3e-12 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 55 TTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCA 114 ||||||| ||||||||||||| ||||||||||||| || | ||||||||| |||||||| Sbjct 2146927 TTAGCCGTTTCAATGGGATCTTTTATCCTGGTCGGTAGACAGATTACCAAATGTCTAGCA 2146986 Query 115 TTCCC 119 |||| Sbjct 2146987 GTCCC 2146991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19038822151680