Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_033774.1
Length=8913
Score E
Sequences producing significant alignments: (Bits) Value
seq195 98.7 6e-17
seq650 95.1 7e-16
seq18530 89.7 3e-14
seq1164 89.7 3e-14
seq109 86.0 4e-13
>seq195
Length=1358929
Score = 98.7 bits (108), Expect = 6e-17
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1298007 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 1297948
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 1297947 GTATTAGCTCT 1297937
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1293982 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 1293923
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 1293922 GTATTAGCTCT 1293912
Score = 86.0 bits (94), Expect = 4e-13
Identities = 63/71 (89%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1227643 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCAGGGTTTGTTGCAT 1227584
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 1227583 GTATTAGCTCT 1227573
>seq650
Length=1207
Score = 95.1 bits (104), Expect = 7e-16
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1101 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 1160
Query 8905 G--ATTGCTCT 8913
| |||||||
Sbjct 1161 GTATTTGCTCT 1171
>seq18530
Length=201
Score = 89.7 bits (98), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || ||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 8 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCATTCCAAAAGTCGGGGTTTGTTGCAC 67
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 68 GTATTAGCTCT 78
>seq1164
Length=1105
Score = 89.7 bits (98), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || ||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 938 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCATAAGTCGGGGTTTGTTGCAC 879
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 878 GTATTAGCTCT 868
>seq109
Length=8785251
Score = 86.0 bits (94), Expect = 4e-13
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905
||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 7096918 GACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCAGGGTTTGTTGCACG 7096969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28394775248928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |