Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq195 98.7 6e-17 seq650 95.1 7e-16 seq18530 89.7 3e-14 seq1164 89.7 3e-14 seq109 86.0 4e-13 >seq195 Length=1358929 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1298007 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 1297948 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1297947 GTATTAGCTCT 1297937 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1293982 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 1293923 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1293922 GTATTAGCTCT 1293912 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1227643 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCAGGGTTTGTTGCAT 1227584 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1227583 GTATTAGCTCT 1227573 >seq650 Length=1207 Score = 95.1 bits (104), Expect = 7e-16 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1101 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 1160 Query 8905 G--ATTGCTCT 8913 | ||||||| Sbjct 1161 GTATTTGCTCT 1171 >seq18530 Length=201 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 8 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCATTCCAAAAGTCGGGGTTTGTTGCAC 67 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 68 GTATTAGCTCT 78 >seq1164 Length=1105 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 938 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCATAAGTCGGGGTTTGTTGCAC 879 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 878 GTATTAGCTCT 868 >seq109 Length=8785251 Score = 86.0 bits (94), Expect = 4e-13 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 7096918 GACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCAGGGTTTGTTGCACG 7096969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28394775248928