Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq168 159 1e-35 seq77 107 7e-20 seq22 89.7 2e-14 >seq168 Length=485607 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 152304 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAATATGCATGGGATTAGCCG 152363 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 152364 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 152421 >seq77 Length=992715 Score = 107 bits (118), Expect = 7e-20 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 13 ATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGA 72 |||||| |||||| |||||| | | ||| |||| | ||| ||||| |||||||| || Sbjct 781878 ATGCAATTTGTGCAACCAGATTTACAGACAACATGCATGGGAATAGCCACTTCAATGAGA 781819 Query 73 TCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||| |||| ||| ||||||||||||||||||||| ||||||||| Sbjct 781818 TCTTTTATTCTGATCGGAGGAGAAATTACCAAACTTCTAGCATT 781775 >seq22 Length=1872023 Score = 89.7 bits (98), Expect = 2e-14 Identities = 91/119 (76%), Gaps = 15/119 (13%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||| |||||||||||| |||||| || ||| ||||| ||||||| Sbjct 1343181 TTTACGATACTATGCAATTTGTGCGACTAGAT----GTACAT----------ATTAGCCA 1343136 Query 62 CTTCAATGGGATCTG-TTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||| | ||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1343135 CTTTAATGTGTTCTTCTTATTCTGGTTGGAGGAGAAATTACCAAACGTCTAGCATTCCC 1343077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19046180847360