Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq3449 159 1e-35 seq1728 159 1e-35 seq3944 154 6e-34 seq2289 93.3 2e-15 seq8938 84.2 8e-13 >seq3449 Length=1674 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||||| |||||| |||||| | | ||| ||||| |||||||||||| Sbjct 1218 TTTATGATACTATGCATTTTGTGCAACCAGACGTACAAACAATATGCATAGGATTAGCCG 1277 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1278 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 1335 >seq1728 Length=61737 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 53538 TTTATGATACTATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 53479 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 53478 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 53421 >seq3944 Length=1040735 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||||| |||||| | | ||| ||||| | |||||||||| Sbjct 85244 TTTATGATACAATGCAATTTGTGCAACCAGACGTACAAACAATATGCATGGGATTAGCCG 85303 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 85304 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 85361 >seq2289 Length=349485 Score = 93.3 bits (102), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 44 TATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCA 103 ||||| | ||||||| ||||||||| |||||| |||| |||| |||||||||| ||||| Sbjct 273105 TATGCATGGGATTAGTCGCTTCAATTGGATCTTTTATTTTGGTTGGAGGAGAAA-TACCA 273047 Query 104 AACGTCTAGCATTCCC 119 |||||||||||||||| Sbjct 273046 AACGTCTAGCATTCCC 273031 >seq8938 Length=567345 Score = 84.2 bits (92), Expect = 8e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 53 GATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAG 112 |||||||||||| || ||||||| |||| |||||||||| |||||||| |||| |||||| Sbjct 492148 GATTAGCCGCTTTAACGGGATCTTTTATTCTGGTCGGAGTAGAAATTATCAAATGTCTAG 492207 Query 113 CATT 116 |||| Sbjct 492208 CATT 492211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19039879375680