Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq9208 89.7 3e-14 seq7644 89.7 3e-14 seq2450 89.7 3e-14 seq9952 86.0 4e-13 seq9504 86.0 4e-13 seq2300 78.8 5e-11 >seq9208 Length=86431 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| Sbjct 43805 ACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTAGCTC 43746 Query 8913 T 8913 | Sbjct 43745 T 43745 >seq7644 Length=985120 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| Sbjct 797906 ACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTAGCTC 797847 Query 8913 T 8913 | Sbjct 797846 T 797846 >seq2450 Length=633704 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||| |||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 532526 GCCCGCGTTAACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGAGGTTTGTTGCAC 532467 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 532466 GTATTAGCTCT 532456 >seq9952 Length=608673 Score = 86.0 bits (94), Expect = 4e-13 Identities = 57/61 (93%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||| Sbjct 287786 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGAGGTTTGTTGCGCGTATTAGCTC 287845 Query 8913 T 8913 | Sbjct 287846 T 287846 >seq9504 Length=1088 Score = 86.0 bits (94), Expect = 4e-13 Identities = 57/61 (93%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||| Sbjct 372 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGAGGTTTGTTGCGCGTATTAGCTC 313 Query 8913 T 8913 | Sbjct 312 T 312 >seq2300 Length=13124 Score = 78.8 bits (86), Expect = 5e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 12411 ACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTTGGGGTTTGTTACACG 12361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28396397076828