Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq3603 163 1e-36 seq4 89.7 2e-14 >seq3603 Length=163330 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | |||||||||| Sbjct 78562 TTTATGATACTATGCAATTTGTGCCACCAGATGTACATACAATATGCATGGGATTAGCCG 78503 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 78502 CTTCAATGGGATCTTTTATCCTGGCCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 78445 >seq4 Length=11052854 Score = 89.7 bits (98), Expect = 2e-14 Identities = 90/118 (76%), Gaps = 8/118 (7%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| ||| | | | || | ||||| | |||||||||| Sbjct 6849888 TTTATGATACTATGCAATTTGTGTAGCCAAATGTACATATAATATGCATGGGATTAGCCG 6849829 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| || |||| |||| | |||||||||||||| ||||| |||||| Sbjct 6849828 CTTCAAT--------TTGTCCTAGTCGAATTAGAAATTACCAAACATCTAGAATTCCC 6849779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045649423040