Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq5505 172 2e-39 seq4621 172 2e-39 seq1453 172 2e-39 seq799 172 2e-39 seq566 172 2e-39 seq79 172 2e-39 seq35 172 2e-39 seq7 172 2e-39 seq2 172 2e-39 seq91 168 3e-38 seq812 161 4e-36 seq591 156 2e-34 seq7794 145 3e-31 seq299 141 4e-30 seq786 140 1e-29 seq6 114 5e-22 seq10 109 2e-20 seq1760 84.2 8e-13 seq3 78.8 4e-11 >seq5505 Length=61148 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 9428 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 9369 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 9368 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 9311 >seq4621 Length=83029 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 12645 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 12704 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 12705 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 12762 >seq1453 Length=264866 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 239191 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 239250 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 239251 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 239308 >seq799 Length=380235 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 36583 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 36642 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 36643 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 36700 >seq566 Length=456964 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 377459 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 377518 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 377519 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 377576 >seq79 Length=1128413 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 214799 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 214858 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 214859 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 214916 >seq35 Length=1653366 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 1310687 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 1310746 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1310747 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 1310804 >seq7 Length=114765206 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 112155107 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 112155048 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 112155047 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 112154990 Score = 98.7 bits (108), Expect = 4e-17 Identities = 56/57 (98%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 63 TTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 62013108 TTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 62013052 >seq2 Length=96359640 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 4062910 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 4062851 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 4062850 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 4062793 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 64027740 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 64027799 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 64027800 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 64027857 >seq91 Length=1065697 Score = 168 bits (186), Expect = 3e-38 Identities = 108/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 155589 TTTATGATACTATGTAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 155648 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 155649 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 155706 >seq812 Length=377782 Score = 161 bits (178), Expect = 4e-36 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 3 TTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGC 62 |||||||||||||||| |||||| |||||| ||| |||| ||||| | ||||||||||| Sbjct 42118 TTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCGC 42177 Query 63 TTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 42178 TTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAACTACCAAACGTCTATCATTCCC 42234 >seq591 Length=448281 Score = 156 bits (172), Expect = 2e-34 Identities = 106/118 (90%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || ||| |||| ||||| | |||||||||| Sbjct 389600 TTTATGATACTATGCAATTTGTGCGACC-GATGTCCATACAATATGCATGGGATTAGCCG 389542 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| Sbjct 389541 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAATGTATAGCATTCCC 389484 >seq7794 Length=25023 Score = 145 bits (160), Expect = 3e-31 Identities = 97/108 (90%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | ||||| |||| Sbjct 16132 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTGGCCG 16191 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTC 109 | |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 16192 CGTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTC 16239 >seq299 Length=610254 Score = 141 bits (156), Expect = 4e-30 Identities = 99/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 7 GATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCA 66 |||||||||||| |||||| ||||| ||| |||| ||||| | ||||| ||||||||| Sbjct 134896 GATACTATGCAATTTGTGCGACCAGTTGTCCATACAATATGCATGGGATTTGCCGCTTCA 134837 Query 67 ATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 134836 ATGGGATCCTTCATCCTAGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 134784 >seq786 Length=386440 Score = 140 bits (154), Expect = 1e-29 Identities = 91/100 (91%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 20 TTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTA 79 |||||| |||||| |||||||| ||||| | |||||||||||||||||||||||| ||| Sbjct 82313 TTGTGCGACCAGATGTCCGTACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTA 82254 Query 80 TCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||||| ||||||||||||||| |||||| Sbjct 82253 TCCTGGTCGGAGGAGAATTTACCAAACGTCTAGTATTCCC 82214 >seq6 Length=97571839 Score = 114 bits (126), Expect = 5e-22 Identities = 97/118 (82%), Gaps = 6/118 (5%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || |||||| |||||| || |||| ||||| | ||||||||| Sbjct 89584406 TTTATGATACTATGTAATTTGTGCGACCAGATGTCTATACAATATGCAT-GGATTAGCCA 89584348 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | ||||| || ||||||||||||||||||||||||||||| |||||| ||| || Sbjct 89584347 CATCAAT-----CTTTTATCCTGGTCGGAGGAGAAATTACCAAATGTCTAGTATTTCC 89584295 >seq10 Length=51082206 Score = 109 bits (120), Expect = 2e-20 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 57 AGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 18679085 AGCCGCTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 18679144 Query 117 CCC 119 ||| Sbjct 18679145 CCC 18679147 >seq1760 Length=229456 Score = 84.2 bits (92), Expect = 8e-13 Identities = 74/92 (80%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCC- 60 |||||||||| |||||| |||||| |||| | ||| |||| ||||| | |||||| Sbjct 207088 TTTATGATACAATGCAATTTGTGCGACCATATGTCCATACAATATGCATGGGATTATTAC 207029 Query 61 --GCTTCAATGGGATCTGTTATCCTGGTCGGA 90 ||||||||||||||| |||||||||| ||| Sbjct 207028 ATGCTTCAATGGGATCTTTTATCCTGGTTGGA 206997 >seq3 Length=72893213 Score = 78.8 bits (86), Expect = 4e-11 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 77 TTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61677958 TTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 61678000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19038651745920