Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq52412 172 2e-39 seq49112 172 2e-39 seq47981 172 2e-39 seq37623 172 2e-39 seq27640 172 2e-39 seq2691 172 2e-39 seq1809 165 3e-37 seq51530 163 1e-36 seq48319 163 1e-36 seq35284 163 1e-36 seq16333 163 1e-36 seq16088 163 1e-36 seq8777 163 1e-36 seq5134 163 1e-36 seq1492 163 1e-36 seq51306 159 1e-35 seq16260 154 6e-34 seq8401 154 6e-34 seq48691 150 7e-33 seq9777 141 4e-30 seq48216 138 4e-29 seq14612 104 9e-19 seq49555 95.1 5e-16 seq5836 93.3 2e-15 seq6202 87.8 7e-14 seq5758 87.8 7e-14 >seq52412 Length=50984 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 3113 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 3054 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3053 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 2996 Score = 147 bits (162), Expect = 8e-32 Identities = 105/118 (89%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || |||||| |||||| ||| | || ||||| | |||||||||| Sbjct 5133 TTTATGATACTATGTAATTTGTGCGACCAGATGTCCATGCAATATGCATGGGATTAGCCG 5074 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 5073 CTTCAATGTGATCT-TTATCCTGGTCGGAGGAGAAATTACC-AACGTCTAGCATTCCC 5018 >seq49112 Length=84124 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 76107 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 76166 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 76167 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 76224 >seq47981 Length=122136 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 18442 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 18383 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 18382 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 18325 >seq37623 Length=653 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 393 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 452 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 510 >seq27640 Length=883 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 718 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 777 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 835 >seq2691 Length=22502 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 128 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 187 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 245 >seq1809 Length=17232 Score = 165 bits (182), Expect = 3e-37 Identities = 108/118 (92%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 1033 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 974 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 CTTCAATGGG-TCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 917 >seq51530 Length=204309 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | | |||||||| Sbjct 96078 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGAATTAGCCG 96019 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 96018 CTTCAATGGGATTTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 95961 >seq48319 Length=152122 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| ||||| ||| |||| ||||| | |||||||||| Sbjct 99292 TTTATGATACTATGCAATTTGTGTGACCAGTTGTCCATACAATATGCATGGGATTAGCCG 99351 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 99352 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 99409 >seq35284 Length=138988 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| || ||| |||||| ||| |||| ||||| | ||||| |||| Sbjct 30876 TTTATGATACTATGCAATTTTTGCGACCAGATGTCCATACAATATGCATGGGATTCGCCG 30935 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 30936 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 30993 >seq16333 Length=1487 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| | |||| ||| |||| ||||| | ||||||| || Sbjct 1281 TTTATGATACTATGCAATTTGTGCGATCAGATGTCCATACAATATGCATGGGATTAGTCG 1340 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1341 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 1398 >seq16088 Length=1509 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||| |||||||| |||||| |||||| |||| |||| ||||| | |||||||||| Sbjct 632 TTTATGATTCTATGCAATTTGTGCAACCAGATATCCATACAATATGCATGGGATTAGCCG 573 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| Sbjct 572 CTTCAATGGGATCTTTTGTCCTGGTCGGAGGAGAAATTACCAAACGTCTAACATTCCC 515 >seq8777 Length=311568 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| | |||| ||| |||| ||||| | ||||||| || Sbjct 22283 TTTATGATACTATGCAATTTGTGCGATCAGATGTCCATACAATATGCATGGGATTAGTCG 22342 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 22343 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 22400 >seq5134 Length=12682 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 9053 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 8994 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 8993 CTTCAATGGGATCTTTTATCCTGGTCGGAGAAGAAATTGCCAAACGTCTAGCATTCCC 8936 >seq1492 Length=393980 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||| |||||||| |||||| |||||| |||| |||| ||||| | |||||||||| Sbjct 32527 TTTATGATTCTATGCAATTTGTGCAACCAGATATCCATACAATATGCATGGGATTAGCCG 32468 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| Sbjct 32467 CTTCAATGGGATCTTTTGTCCTGGTCGGAGGAGAAATTACCAAACGTCTAACATTCCC 32410 >seq51306 Length=39314 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 1438 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 1497 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 1498 CTTCAATAGGATCTTTTATCCTGGTCGGAGGAGAAATTACTAAATGTCTAGCATTCCC 1555 >seq16260 Length=214931 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| ||||| | | |||||| | Sbjct 103225 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCATGGAATTAGCTG 103284 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| ||| | |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 103285 CTTTAATAGAATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 103342 >seq8401 Length=130781 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| ||||||||||| |||||| |||||| ||| |||| ||||| | ||||||| | Sbjct 91925 TTTATAATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGGCA 91984 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 91985 CTTCAATGGGATCTTTTATCTTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 92042 >seq48691 Length=305884 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| | | ||| | | ||| |||||| Sbjct 14938 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATTAAATATACATGGGAATAGCCG 14879 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 14878 CTTCAATGGAATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 14821 >seq9777 Length=306685 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| || ||||| | |||||||||| Sbjct 174643 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATATGATATGCATGGGATTAGCCG 174702 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| ||||| |||||||||| |||||||||||||||||| | |||||||||| Sbjct 174703 CTTCAATGAGATCTTTTATCCTGGTTGGAGGAGAAATTACCAAATATGTAGCATTCCC 174760 >seq48216 Length=67608 Score = 138 bits (152), Expect = 4e-29 Identities = 102/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | ||||| ||| |||| ||||| | | |||||||| Sbjct 33570 TTTATGATACTATGCAATTTGTACAACCAGTTGTCCATACAATATGCATGGCATTAGCCG 33511 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||| Sbjct 33510 CTTCAATGGGATCTTTTATCCTTGTCG--GGAGAAATTACCAAACATCTAGCATTCCC 33455 >seq14612 Length=225392 Score = 104 bits (114), Expect = 9e-19 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 53 GATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAG 112 ||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 125196 GATTAGCTGCTTTAATGAGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAG 125137 Query 113 CATTCCC 119 ||||||| Sbjct 125136 CATTCCC 125130 >seq49555 Length=50775 Score = 95.1 bits (104), Expect = 5e-16 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 60 CGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 3202 CGCTTCAATGGGATCTTTTATCCTGATCGGAGGAGAAATTACCAAACGTCTAGCATT 3258 >seq5836 Length=306502 Score = 93.3 bits (102), Expect = 2e-15 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 56 TAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCAT 115 ||||| |||||||||||| | |||||||||| |||| ||||||||||||||||||||||| Sbjct 285489 TAGCCACTTCAATGGGATTTTTTATCCTGGTTGGAGAAGAAATTACCAAACGTCTAGCAT 285430 Query 116 TCCC 119 |||| Sbjct 285429 TCCC 285426 >seq6202 Length=141672 Score = 87.8 bits (96), Expect = 7e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 53 GATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGT 108 || ||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 2460 GAGTAGCCGCTTCAGTGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGT 2405 >seq5758 Length=106756 Score = 87.8 bits (96), Expect = 7e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 99196 TCAATGGGATCTTTTATCCTGGTCAGAGGAGAAATTACCAAAAGTCTAGCATTCCC 99251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19035332375040