Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_001749.2 Length=6495 Score E Sequences producing significant alignments: (Bits) Value seq19082 122 4e-24 >seq19082 Length=336771 Score = 122 bits (134), Expect = 4e-24 Identities = 349/527 (66%), Gaps = 15/527 (3%) Strand=Plus/Minus Query 3818 AATGTGGGCAAATCATTCGGAGAGATCAGACATTGACTGGAAACTTGACCACGCCTTTCT 3877 || || |||||||||||| ||| | ||||| || || ||| ||| |||| | |||| | Sbjct 95924 AAGGTCGGCAAATCATTCTGAGCGCTCAGATATAGATTGGCCACTAGACCGTGTCTTTAT 95865 Query 3878 CTTCATGAAATCACAATATTGCACGAAGGAAGGGAAGATGTTCACCGAAGCTAAAGCTGG 3937 |||||||| ||| ||||| ||| | | || |||| | ||||| |||||||| Sbjct 95864 GTTCATGAAGAGCCAACTCTGCACAAAGTATGAAAAAATGTACTGTGAAGCAAAAGCTGG 95805 Query 3938 CCAAACTTTGGCCTGTTTCCAACATATAGTCCTATTTAGATTTGGACCCATGTTGAGAGC 3997 || || | || ||||||||||| ||||| ||||||| | | || || | | ||||| Sbjct 95804 TCAGACACTTGCATGTTTCCAACACATAGTGCTATTTAAAATGGGTCCAGTCCTTAGAGC 95745 Query 3998 AATTGAAAGTGCCTTTTTGAGAAGCTGTGGAGACTCATACTACATACACTCCGGGAAAAA 4057 || |||| || || |||| ||||| ||||| | |||||||| | ||| | Sbjct 95744 CATAGAAAAGGCATTCGTGAGGGCTTGTGGTGACTCTTTTTACATACA-TAGTTCAAAGA 95686 Query 4058 CTTCTTCTGC-CTGGATA---GCTTTGTGACAAAGAATGCAAGTGTCTTTG---ATGGAT 4110 || | ||| || | | | ||||| | |||| || |||| ||| | Sbjct 95685 ATTTTGATGCACTAAACAAATGGGTTGTG---GAAAATGGAAAATCATTTGCGAGTGGTT 95629 Query 4111 TTTCAATTGAGTCAGACTACACGGCCTTTGACTCATCTCAGGAC-CACGTCATATTGGCC 4169 ||| |||||||||| || || ||||| |||||||||||| ||| | ||| | || Sbjct 95628 CATCAGTTGAGTCAGAGTATGAAGCATTTGATTCATCTCAGGACACAC-TTATACTTGCT 95570 Query 4170 TTTGAAATGGCACTGTTACAATACCTGGGCGTGTCAAAGGAGTTTCAGCTAGATTACCTT 4229 ||||| | || | || | || || || || | ||| || | ||||| | Sbjct 95569 TTTGAGGTTGCCTTATTGAGGAAGCTAGGTGTTTCTAGAGAG-ATCGTTGATATTACATA 95511 Query 4230 AGACTGAAATTAACTCTCGGATGCCGTCTCGGATCACTAGCAATAATGAGGTTCACAGGA 4289 |||| | | | | || | | |||||| | || | |||||||| || || Sbjct 95510 TCCTTGAAGGTCAATTTGGGGTCGAGACTCGGAAATTTTGCGGTGATGAGGTTTACCGGT 95451 Query 4290 GAATTTTGCACTTTCTTATTCAACACATTTGCCAATATGCTGTTTAC 4336 ||| ||||||| || | |||||||||||||| || ||||||||||| Sbjct 95450 GAA-TTTGCACATTTCTGTTCAACACATTTGCAAACATGCTGTTTAC 95405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20656446464928