Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_002729.1 Length=7352 Score E Sequences producing significant alignments: (Bits) Value seq19082 113 2e-21 >seq19082 Length=336771 Score = 113 bits (124), Expect = 2e-21 Identities = 347/527 (66%), Gaps = 21/527 (4%) Strand=Plus/Minus Query 4472 ATATTCATGAAGAGTCAACTCTGCACAAAATTTGAAAAGAGGTTCGTTGAAGCTAAAGCT 4531 || ||||||||||| |||||||||||||| | |||||| | || | |||||| |||||| Sbjct 95866 ATGTTCATGAAGAGCCAACTCTGCACAAAGTATGAAAAAATGTACTGTGAAGCAAAAGCT 95807 Query 4532 GGACAAACATTGGCTTGTTTCTCCCACATTGTGCTTTGCAGATTTGCCCCATATGTGAGA 4591 || || ||| | || |||||| ||||| ||||| | | | | | ||| | ||| Sbjct 95806 GGTCAGACACTTGCATGTTTCCAACACATAGTGCTATTTAAAATGGGTCCAGTCCTTAGA 95747 Query 4592 TACATGGAGAAG---ATAGTGAACGAAAATTTGCCAAAAAATTTTTACATTCACAATGGG 4648 ||| || ||| | |||| | || | ||||||||| || | | Sbjct 95746 GCCATAGAAAAGGCATTCGTGAGGG---CTTGTGGTGACTCTTTTTACATACATAGTTCA 95690 Query 4649 AAAAATTTTGATGATCTGAATGATT---ATGTGaaaa----aaaaTAACTT--TAGTGGC 4699 || |||||||||| || || | | |||| ||| ||||| | || ||||| Sbjct 95689 AAGAATTTTGATGCACTAAACAAATGGGTTGTGGAAAATGGAAAATCATTTGCGAGTGGT 95630 Query 4700 AGGTGCATAGAGTCTGATTATGAAGCATTTGATGCATCTCAAGACAGCCAAATATTAGCA 4759 | | ||||| || ||||||||||||||| ||||||| |||| | ||| | || Sbjct 95629 TCATCAGTTGAGTCAGAGTATGAAGCATTTGATTCATCTCAGGACACACTTATACTTGCT 95570 Query 4760 TTTGAGGTGGCAATAATGAGAAGAATGAATATGCCTC-AG-GAATTCATAGATGATTATG 4817 |||||||| || || |||| ||| | || || || || || | ||| |||| Sbjct 95569 TTTGAGGTTGCCTTATTGAG--GAAGCTAGGTGTTTCTAGAGAGATCGTTGAT-ATTACA 95513 Query 4818 TTTGGCTAAAGTGCAACTTGCGAAGTAAGTTGGGTAATATGGCCATTATGCGATTTACTG 4877 | | | ||| ||| ||| | | | || ||| | || | ||| | ||||| | Sbjct 95512 TATCCTTGAAGGTCAATTTGGGGTCGAGACTCGGAAATTTTGCGGTGATGAGGTTTACCG 95453 Query 4878 GTGAAGCTGCCACCTTTCTGTTTAACACTATGGCAAATATAGTGTTCACCATAATGGCTT 4937 ||||| || ||| |||||||| ||||| | ||||| || |||| || | || | Sbjct 95452 GTGAATTTG-CACATTTCTGTTCAACACATTTGCAAACATGCTGTTTACATTTCTGAAGT 95394 Query 4938 ATGATTTGAAGGGAGATGAATGCATACTTTTTGCCGGAGATGATATG 4984 ||||||||||| ||| || | | || ||||| || ||||||||| Sbjct 95393 ATGATTTGAAGAGAGGAGATAGATTGCTGTTTGCAGGTGATGATATG 95347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23397207359872