Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_013527.1 Length=8662 Score E Sequences producing significant alignments: (Bits) Value seq19082 80.6 1e-11 >seq19082 Length=336771 Score = 80.6 bits (88), Expect = 1e-11 Identities = 100/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 5517 ATTACATATTCATAAAGACCCACCTTGGCTCCAAAATCGGGAACTTTGCTATAATGAGAT 5576 ||||||||| | | ||| | | | || || | | |||| || ||||| | ||||| | Sbjct 95518 ATTACATATCCTTGAAGGTCAATTTGGGGTCGAGACTCGGAAATTTTGCGGTGATGAGGT 95459 Query 5577 TTTCTGGTGAGGCAAGTACCTTTTTGTTCAACACACTTGCGAACATGTTATTTACCTTCT 5636 || | ||||| | || ||| ||||||||||| |||| |||||| | ||||| || Sbjct 95458 TTACCGGTGAATTT-GCACATTTCTGTTCAACACATTTGCAAACATGCTGTTTACATTTC 95400 Query 5637 TGAAGTATGATTTGAA 5652 |||||||||||||||| Sbjct 95399 TGAAGTATGATTTGAA 95384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27586701843392