Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_015395.1 Length=6942 Score E Sequences producing significant alignments: (Bits) Value seq19082 84.2 1e-12 >seq19082 Length=336771 Score = 84.2 bits (92), Expect = 1e-12 Identities = 373/569 (66%), Gaps = 39/569 (7%) Strand=Plus/Minus Query 4117 TCAGAACCAGACTGGAAATTAAACGATGTTTTCCTCTTTATGAAAACTCAGCTTTGTACA 4176 ||||| ||| ||| | || || ||| || | || ||||| | || || || ||| Sbjct 95899 TCAGATATAGATTGGCCACTAGACCGTGTCTTTATGTTCATGAAGAGCCAACTCTGCACA 95840 Query 4177 AAGTACGAAAAAAGATTTTGTGATGCAAAGGCGGGACAAACTTTAGCATGTTTCAGCCAC 4236 ||||| ||||||| | ||||| ||||| || || || || | ||||||||| ||| Sbjct 95839 AAGTATGAAAAAATGTACTGTGAAGCAAAAGCTGGTCAGACACTTGCATGTTTCCAACAC 95780 Query 4237 ATAGTC---TTGAACAGATTTGCAGCTCCAACTAGATACATTGaaaaaaaaaTAAGTCAG 4293 ||||| || || | | ||| ||| |||| ||| ||||| | | || || Sbjct 95779 ATAGTGCTATTTAAAATGGGTCCAG-TCCT--TAGAGCCATAGAAAAGGCATTC-GTGAG 95724 Query 4294 TGCTTGCCAT----CTAATTAC-TACATTCATCAAAAGAAAAATTTTGATTGCCTCAATG 4348 ||||| | || |||| ||||| ||||| ||||||||| || || Sbjct 95723 GGCTTGTGGTGACTCTTTTTACATACATAGTTCAAAG----AATTTTGATGCACTAAACA 95668 Query 4349 AATGGGTCATCAGGAATG--ACTTCA---GCGAATCTTGCCT-AGA-GAGT--GACTATG 4399 ||||||| | |||| | ||| |||| | | | | || |||| || |||| Sbjct 95667 AATGGGTTGTGGAAAATGGAAAATCATTTGCGAGTGGTTCATCAGTTGAGTCAGAGTATG 95608 Query 4400 AAGCTTTTGATTCTTCCCAGGATTGCCTAATATTGGCTTTTGAGTATGAGCTTTTAAAGT 4459 |||| |||||||| || ||||| || ||| | ||||||||| || | || | | Sbjct 95607 AAGCATTTGATTCATCTCAGGACACACTTATACTTGCTTTTGAGGTTGCCTTATTGAGGA 95548 Query 4460 A--TATGGGATGGAAGCAGGATCTTCTGGATGATTACTTGGATC--TAAAATTCAACTTG 4515 | || | | | || |||| | ||| ||||| | ||| | || |||| ||| Sbjct 95547 AGCTAGGTGTTTCTAGAGAGATCGTT--GAT-ATTACAT--ATCCTTGAAGGTCAATTTG 95493 Query 4516 GGCTGTCGATTAGGCAATCTGGCTGTGATGAGGTTCACTGGTGAGTTTGGGACCTTTTTG 4575 || | || | || ||| | || ||||||||||| || ||||| ||| | || ||| || Sbjct 95492 GGGTCGAGACTCGGAAATTTTGCGGTGATGAGGTTTACCGGTGAATTT-GCACATTTCTG 95434 Query 4576 TTCAACACCTTGGCAAATATGGTTTTCACTTTTATGTCCTATGAATTGAATGGAAAAGAA 4635 |||||||| || ||||| ||| | || || ||| || ||||| ||||| || || | Sbjct 95433 TTCAACACATTTGCAAACATGCTGTTTACATTTCTGAAGTATGATTTGAAGAGAGGAG-A 95375 Query 4636 TCCATATGC--TTTGCAGGGGATGACATG 4662 | || ||| |||||||| ||||| ||| Sbjct 95374 TAGAT-TGCTGTTTGCAGGTGATGATATG 95347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22085991529152