Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_029301.1 Length=7925 Score E Sequences producing significant alignments: (Bits) Value seq19082 87.8 9e-14 >seq19082 Length=336771 Score = 87.8 bits (96), Expect = 9e-14 Identities = 347/534 (65%), Gaps = 29/534 (5%) Strand=Plus/Minus Query 4591 TTTCTTTTCATAAAGTCACAATTGTGCACAAAATATGAAAAGAAATTTTGCGATGCCAAA 4650 ||| | ||||| ||| ||| | |||||||| |||||||| | | || || || ||| Sbjct 95869 TTTATGTTCATGAAGAGCCAACTCTGCACAAAGTATGAAAAAATGTACTGTGAAGCAAAA 95810 Query 4651 GCAGGTCAGACCTTGGCTTGTTTCTCTCATATGATTTTGTGCAAATTTGCGCCTTTAAAT 4710 || |||||||| | || |||||| || || | | | ||| | | || | | Sbjct 95809 GCTGGTCAGACACTTGCATGTTTCCAACACATAGTGCTATTTAAAATGGGTCCAGTCCTT 95750 Query 4711 AGGTACATCGAGAAAAAGGTGTC-TGAAGTCCTGCC-TGATCGTTTTTACATCCATCAGA 4768 || ||| |||||| | || ||| | | || ||| ||||||||| ||| Sbjct 95749 AGAGCCAT--AGAAAAGGCATTCGTGAGGGCTTGTGGTGACTCTTTTTACATACATAGTT 95692 Query 4769 AAAAGAATTTTGATGAGCTTGAGGAGTGGGTT-----AAACG--ATATGACTTT--AGTG 4819 |||||||||||||| || | | |||||| ||| | | || | || |||| Sbjct 95691 CAAAGAATTTTGATGCACTAAACAAATGGGTTGTGGAAAATGGAAAATCATTTGCGAGTG 95632 Query 4820 GCATATGCACTGAATCAGATTACGAGGCTTATGATTCATCTCAGG--ATGCTTACACTCT 4877 | || ||| ||||| || || || | |||||||||||||| | |||| | || Sbjct 95631 GTTCATCAGTTGAGTCAGAGTATGAAGCATTTGATTCATCTCAGGACACACTTATA--CT 95574 Query 4878 CGCATTTGAGTATGAGCTACTGAAGTATCTTGGAGTTTC----GAATTCTATGCTAAGTG 4933 || |||||| || || ||| | | || || ||||| || || || | Sbjct 95573 TGCTTTTGAGGTTGCCTTATTGAGGAAGCTAGGTGTTTCTAGAGAGATCGTTGAT----- 95519 Query 4934 ATTACCTTTATTTGAAGATGCATCTGAATTGCAAATTGGGTAATTTAGCTATAATGAGGT 4993 ||||| | | |||||| | || || | | | | || ||||| || | ||||||| Sbjct 95518 ATTACATATCCTTGAAGGTCAATTTGGGGTCGAGACTCGGAAATTTTGCGGTGATGAGGT 95459 Query 4994 TCACGGGCGAATTCTGTACTTTCCTCTTCAACACACTAACGAACATGCTTTTTACATTCA 5053 | || || ||||| || || || || ||||||||| | | |||||||| |||||||| Sbjct 95458 TTACCGGTGAATT-TGCACATTTCTGTTCAACACATTTGCAAACATGCTGTTTACATTTC 95400 Query 5054 TGAAATATGATGTTCGGAGGGCTCATGCCATTTGT-TTTGCCGGTGATGATATG 5106 |||| |||||| | ||| | || ||| | ||||| |||||||||||| Sbjct 95399 TGAAGTATGATTTGAAGAGAGGAGAT-AGATTGCTGTTTGCAGGTGATGATATG 95347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25229711435488