Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_030657.1 Length=6400 Score E Sequences producing significant alignments: (Bits) Value seq19082 156 2e-34 >seq19082 Length=336771 Score = 156 bits (172), Expect = 2e-34 Identities = 341/502 (68%), Gaps = 9/502 (2%) Strand=Plus/Minus Query 3843 CGATCCGATATTGACTGGAATTTGGACCATGTCTTCTTGTTTATGAAAAGTCAATATTGC 3902 || || ||||| || ||| | |||| |||||| |||| ||||| || ||| ||| Sbjct 95902 CGCTCAGATATAGATTGGCCACTAGACCGTGTCTTTATGTTCATGAAGAGCCAACTCTGC 95843 Query 3903 ACAAAAGAGGCCAAAATGTTTACTGAAGCCAAGGCAGGACAAACTCTAGCGTGTTTCCAG 3962 ||||| | | ||||||| |||||| || || || || || || || |||||||| Sbjct 95842 ACAAAGTATGAAAAAATGTACTGTGAAGCAAAAGCTGGTCAGACACTTGCATGTTTCCAA 95783 Query 3963 CACATTGTGTTGTTCAGGTTTGGTCCTATGTTGAGGGCTATAGAAGCTGCGTTTTTGAGA 4022 ||||| ||| | || | | ||||| | | || || |||||| || || |||| Sbjct 95782 CACATAGTGCTATTTAAAATGGGTCCAGTCCTTAGAGCCATAGAAAAGGCATTCGTGAGG 95723 Query 4023 GCATGTGGTGAGTCCTACTACATTCATTCCGGAAAGAACTTCTTTGCATTGGACACATTT 4082 || |||||||| || | ||||| ||| |||||| || |||| | ||| || Sbjct 95722 GCTTGTGGTGACTCTTTTTACATACATAGTTCAAAGAATTTTGATGCACTAAACAAATGG 95663 Query 4083 GTTACCAGGAATGCAAGCT--TTTTCGA-TGGAGAGTCAATAGAATCTGATTACACAGCT 4139 ||| |||| || | ||| ||| ||| ||| | || || || || ||| Sbjct 95662 GTTGTGGAAAATGGAAAATCATTTGCGAGTGGTTCATCAGTTGAGTCAGAGTATGAAGCA 95603 Query 4140 TTTGATTCATCTCAGGACCACAC-TGTTTTGGCTTTTGAGATTGAGCTCTTGAAACATCT 4198 ||||||||||||||||| ||||| | | | ||||||||| ||| | |||| | || Sbjct 95602 TTTGATTCATCTCAGGA-CACACTTATACTTGCTTTTGAGGTTGCCTTATTGAGGAAGCT 95544 Query 4199 GGGAGTGTCAAATGAGTTCATAATG-GATTACAAGAAAATTAAATTGACCTTGGGGTGTA 4257 || || || | ||| || | || |||||| | || | | ||||||| | Sbjct 95543 AGGTGTTTCTAGAGAGATCGT--TGATATTACATATCCTTGAAGGTCAATTTGGGGTCGA 95486 Query 4258 GATTGGGGAGTTTAGCCATAATGAGATTTACGGGTGAATTCTGCACCTTTTTGTTCAACA 4317 || | || | ||| || | ||||| ||||| |||||||| ||||| ||| ||||||||| Sbjct 95485 GACTCGGAAATTTTGCGGTGATGAGGTTTACCGGTGAATT-TGCACATTTCTGTTCAACA 95427 Query 4318 CATTTGCAAACATGCTATTCAC 4339 |||||||||||||||| || || Sbjct 95426 CATTTGCAAACATGCTGTTTAC 95405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20352628162688