Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq35353 172 2e-39 seq16388 172 2e-39 seq55356 145 3e-31 seq3590 95.1 5e-16 seq1588 89.7 2e-14 seq511713 86.0 2e-13 seq511764 82.4 3e-12 seq59205 80.6 1e-11 >seq35353 Length=46587 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 12808 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 12749 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 12748 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 12691 >seq16388 Length=394685 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 86805 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 86864 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 86865 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 86922 >seq55356 Length=26732 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| || ||| ||| |||| ||||| | |||||||| | Sbjct 10808 TTTATGATACTATGCAATTTGTGCAACTAGATGTCCATACAATATGCATGGGATTAGCTG 10867 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| |||||| || ||||||| ||||||||||||| |||||||||||||||||| Sbjct 10868 CTTCAATAGGATCTTTTGTCCTGGTTGGAGGAGAAATTATCAAACGTCTAGCATTCCC 10925 >seq3590 Length=594776 Score = 95.1 bits (104), Expect = 5e-16 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | ||||||||| Sbjct 144289 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCA 144230 Query 62 CTTCAATGGGATCTGTTATCCT 83 ||||||| |||||| |||| || Sbjct 144229 CTTCAATAGGATCTTTTATTCT 144208 >seq1588 Length=129276 Score = 89.7 bits (98), Expect = 2e-14 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 85216 TCAATGGGATCTTTTATCC-GGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 85270 >seq511713 Length=2134 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 57 AGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| Sbjct 1583 AGCCGCTTCAATGGGATCTCCTATCTAGGTCGGAGAAGAAATTACCAAACGTCTAGCATT 1524 >seq511764 Length=2129 Score = 82.4 bits (90), Expect = 3e-12 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 57 AGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||| Sbjct 1579 AGCCGCTTCGATGGGATCTCCTATCTAGGTCGGAGAAGAAATTACCAAACGTCTAGCATT 1520 >seq59205 Length=34983 Score = 80.6 bits (88), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAG-GATTAGCC 60 ||||||||| | || || |||| | | ||||| | ||| |||| | | |||||||| Sbjct 17734 TTTATGATATTGTGTAACTTGTACAATCAGAATCTCACACAATATGTATGGTGATTAGCC 17793 Query 61 GCTTCAAT--GGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 |||||||| | ||| | ||||||||||||| ||| |||||||||| ||||| Sbjct 17794 GCTTCAATTAGAGATGTTTTATCCTGGTCGGCAGAGGAATTACCAAAAGTCTA 17846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18852744269760