Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq253918 172 2e-39 seq204086 172 2e-39 seq199773 172 2e-39 seq50688 172 2e-39 seq22130 170 7e-39 seq244742 145 3e-31 seq175568 141 4e-30 seq110868 141 4e-30 seq198710 122 3e-24 seq35292 102 3e-18 seq77141 82.4 3e-12 seq203671 78.8 4e-11 >seq253918 Length=155941 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 73463 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 73404 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 73403 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 73346 >seq204086 Length=33352 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 31400 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 31459 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 31460 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 31517 Score = 123 bits (136), Expect = 9e-25 Identities = 99/120 (83%), Gaps = 10/120 (8%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAA----TTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTA 57 |||||||||||||||| | |||||| ||||| ||| |||| ||||| | |||||| Sbjct 32667 TTTATGATACTATGCANACAATTTGTGCGACCAGGTGTCCATACAATATGCATGGGATTA 32726 Query 58 GCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 32727 GCCGCTTCA------TCTTTTATCCTGGTCGGAGGAGAAATTACCAAACATCTAGCATTC 32780 >seq199773 Length=22252 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 14128 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 14187 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 14188 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 14245 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||| ||| Sbjct 15794 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTATCCG 15853 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 15854 CTTCAATGGGATCTTTTATCCCAGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 15911 >seq50688 Length=5144 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 325 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 384 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 385 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 442 >seq22130 Length=1426 Score = 170 bits (188), Expect = 7e-39 Identities = 109/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| |||| |||||||||||| Sbjct 1407 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACA--ATGCATAGGATTAGCCG 1350 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1349 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 1292 >seq244742 Length=136787 Score = 145 bits (160), Expect = 3e-31 Identities = 94/103 (91%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 17 AAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTG 76 || |||||| |||||| ||| |||| ||||| | |||||||||||||||||||||||| Sbjct 73481 AATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTT 73540 Query 77 TTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 73541 TTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 73583 Score = 136 bits (150), Expect = 2e-28 Identities = 92/103 (89%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 17 AAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTG 76 || |||||| |||||| ||| |||| ||||| | |||||||||||||||||||||||| Sbjct 63978 AATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTT 64037 Query 77 TTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||||||| ||||||||||||| Sbjct 64038 TTATCCTGGTCGGATGAGAAATTACCAAATGTCTAGCATTCCC 64080 >seq175568 Length=7642 Score = 141 bits (156), Expect = 4e-30 Identities = 104/119 (87%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||| Sbjct 4723 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCT- 4665 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCT-AGCATTCCC 119 |||||||||||||| || || |||||||||||||||||||||||||||| | ||||||| Sbjct 4664 CTTCAATGGGATCTTTTGTCTTGGTCGGAGGAGAAATTACCAAACGTCTAANCATTCCC 4606 >seq110868 Length=172734 Score = 141 bits (156), Expect = 4e-30 Identities = 103/118 (87%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 26294 TTTATGATACTATACAATTTGTGCGACCAGATATCTATACAATATGCATGGGATTAGCCG 26235 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||||| |||||||| |||||||||||||||| ||||| |||||||||| Sbjct 26234 CTTTAATGGGATCTTTTATCCTGATCGGAGGAGAAATTACTAAACG-ATAGCATTCCC 26178 >seq198710 Length=206111 Score = 122 bits (134), Expect = 3e-24 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 40 ACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATT 99 ||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 169381 ACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATCCTAGTCGGAGGAGAAATT 169440 Query 100 ACCAAACGTCTAGCATTCCC 119 |||||||||||||||||||| Sbjct 169441 ACCAAACGTCTAGCATTCCC 169460 >seq35292 Length=62472 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 44 TATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCA 103 ||||| | ||||||| |||| |||||||||| ||||||||||| ||||||||||||||| Sbjct 12282 TATGCATGGGATTAGATGCTTTAATGGGATCTTTTATCCTGGTCAGAGGAGAAATTACCA 12223 Query 104 AACGTCTAGCATTCCC 119 ||||||||||||| || Sbjct 12222 AACGTCTAGCATTACC 12207 >seq77141 Length=362 Score = 82.4 bits (90), Expect = 3e-12 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 28 CCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTC 87 ||||| ||| |||| ||||| | |||||||||||||||||||||||| ||||||||||| Sbjct 252 CCAGATGTCCATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATCCTGGTC 193 Query 88 GGA 90 ||| Sbjct 192 GGA 190 >seq203671 Length=8216 Score = 78.8 bits (86), Expect = 4e-11 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 74 CTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 8155 CTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 8110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18993503802240