Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_033774.1
Length=8913
Score E
Sequences producing significant alignments: (Bits) Value
seq17892 100 2e-17
seq225444 98.7 6e-17
seq190004 98.7 6e-17
seq182542 98.7 6e-17
seq29223 98.7 6e-17
seq233400 96.9 2e-16
seq189059 96.9 2e-16
seq182350 95.1 7e-16
seq124892 95.1 7e-16
seq173623 91.5 8e-15
seq201647 89.7 3e-14
seq224937 84.2 1e-12
seq201203 84.2 1e-12
seq175671 82.4 4e-12
seq44392 82.4 4e-12
seq243979 80.6 2e-11
>seq17892
Length=331449
Score = 100 bits (110), Expect = 2e-17
Identities = 64/67 (96%), Gaps = 2/67 (3%)
Strand=Plus/Minus
Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 123447 GTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTAT 123388
Query 8908 T-GCTCT 8913
| |||||
Sbjct 123387 TAGCTCT 123381
>seq225444
Length=36278
Score = 98.7 bits (108), Expect = 6e-17
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14343 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 14402
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 14403 GTATTAGCTCT 14413
>seq190004
Length=55059
Score = 98.7 bits (108), Expect = 6e-17
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12977 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 13036
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 13037 GTATTAGCTCT 13047
Score = 84.2 bits (92), Expect = 1e-12
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || ||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 14689 GCCCGCGTCGACGTTTTATATAATAAATGCATCCATTCCAGAAGTCGGGGTTTGTTGCAC 14748
Query 8905 G 8905
|
Sbjct 14749 G 14749
>seq182542
Length=65519
Score = 98.7 bits (108), Expect = 6e-17
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7928 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 7869
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 7868 GTATTAGCTCT 7858
>seq29223
Length=4313
Score = 98.7 bits (108), Expect = 6e-17
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 488
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 487 GTATTAGCTCT 477
>seq233400
Length=7889
Score = 96.9 bits (106), Expect = 2e-16
Identities = 62/65 (95%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 336 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 395
Query 8909 GCTCT 8913
|||||
Sbjct 396 GCTCT 400
>seq189059
Length=131010
Score = 96.9 bits (106), Expect = 2e-16
Identities = 60/62 (97%), Gaps = 2/62 (3%)
Strand=Plus/Minus
Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 110788 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCT 110729
Query 8912 CT 8913
||
Sbjct 110728 CT 110727
>seq182350
Length=523
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GCCCGCGTCGACCATTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 281
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 280 GTATTAGCTCT 270
>seq124892
Length=63263
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 13859 GCTCGCGTCGAACTTTGATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 13918
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 13919 GTATTAGCTCT 13929
Score = 84.2 bits (92), Expect = 1e-12
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905
||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 45642 TGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGCAGTCGAGGTTTGTTGTACG 45697
>seq173623
Length=49664
Score = 91.5 bits (100), Expect = 8e-15
Identities = 59/62 (95%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 41290 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTATTAGCT 41349
Query 8912 CT 8913
||
Sbjct 41350 CT 41351
>seq201647
Length=33064
Score = 89.7 bits (98), Expect = 3e-14
Identities = 62/68 (91%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906
|| || ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 27228 CGCGTCGACCTTTTATCTAATAACTGCATCCCTTCCAGAAGTTGGGGTTTGTTGCACGTA 27287
Query 8907 TT-GCTCT 8913
|| |||||
Sbjct 27288 TTAGCTCT 27295
>seq224937
Length=13684
Score = 84.2 bits (92), Expect = 1e-12
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 6671 GACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTAGGGGTTTGTTGCAC 6721
>seq201203
Length=15464
Score = 84.2 bits (92), Expect = 1e-12
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4474 GTCGACCTTTTATCTAATAAATGATTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4527
>seq175671
Length=46863
Score = 82.4 bits (90), Expect = 4e-12
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 15817 GCCCGCGTCGACCTTTTATATAATAAATACATCCCTTCCAGAAGTTGGGGTTTGTTGCAC 15758
>seq44392
Length=18013
Score = 82.4 bits (90), Expect = 4e-12
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 11748 GCCCGCGTCGACCTTATAGCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 11807
>seq243979
Length=15182
Score = 80.6 bits (88), Expect = 2e-11
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGATT 8908
|||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||
Sbjct 1217 TTGACCTTTTATCTAATAAATGCATCCCTTACAGCAGTCAAGGTTTGTTGCACGTTT 1161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28325254916904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |