Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq17892 100 2e-17 seq225444 98.7 6e-17 seq190004 98.7 6e-17 seq182542 98.7 6e-17 seq29223 98.7 6e-17 seq233400 96.9 2e-16 seq189059 96.9 2e-16 seq182350 95.1 7e-16 seq124892 95.1 7e-16 seq173623 91.5 8e-15 seq201647 89.7 3e-14 seq224937 84.2 1e-12 seq201203 84.2 1e-12 seq175671 82.4 4e-12 seq44392 82.4 4e-12 seq243979 80.6 2e-11 >seq17892 Length=331449 Score = 100 bits (110), Expect = 2e-17 Identities = 64/67 (96%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 123447 GTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTAT 123388 Query 8908 T-GCTCT 8913 | ||||| Sbjct 123387 TAGCTCT 123381 >seq225444 Length=36278 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14343 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 14402 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 14403 GTATTAGCTCT 14413 >seq190004 Length=55059 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12977 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 13036 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 13037 GTATTAGCTCT 13047 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||| |||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 14689 GCCCGCGTCGACGTTTTATATAATAAATGCATCCATTCCAGAAGTCGGGGTTTGTTGCAC 14748 Query 8905 G 8905 | Sbjct 14749 G 14749 >seq182542 Length=65519 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7928 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 7869 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7868 GTATTAGCTCT 7858 >seq29223 Length=4313 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 488 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 487 GTATTAGCTCT 477 >seq233400 Length=7889 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 336 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 395 Query 8909 GCTCT 8913 ||||| Sbjct 396 GCTCT 400 >seq189059 Length=131010 Score = 96.9 bits (106), Expect = 2e-16 Identities = 60/62 (97%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 110788 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCT 110729 Query 8912 CT 8913 || Sbjct 110728 CT 110727 >seq182350 Length=523 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 GCCCGCGTCGACCATTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 281 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 280 GTATTAGCTCT 270 >seq124892 Length=63263 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 13859 GCTCGCGTCGAACTTTGATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 13918 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 13919 GTATTAGCTCT 13929 Score = 84.2 bits (92), Expect = 1e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct 45642 TGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGCAGTCGAGGTTTGTTGTACG 45697 >seq173623 Length=49664 Score = 91.5 bits (100), Expect = 8e-15 Identities = 59/62 (95%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| Sbjct 41290 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTATTAGCT 41349 Query 8912 CT 8913 || Sbjct 41350 CT 41351 >seq201647 Length=33064 Score = 89.7 bits (98), Expect = 3e-14 Identities = 62/68 (91%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || ||||||||||||||||| |||||||||||||||||| ||||||||||||||| | Sbjct 27228 CGCGTCGACCTTTTATCTAATAACTGCATCCCTTCCAGAAGTTGGGGTTTGTTGCACGTA 27287 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 27288 TTAGCTCT 27295 >seq224937 Length=13684 Score = 84.2 bits (92), Expect = 1e-12 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 6671 GACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTAGGGGTTTGTTGCAC 6721 >seq201203 Length=15464 Score = 84.2 bits (92), Expect = 1e-12 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4474 GTCGACCTTTTATCTAATAAATGATTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4527 >seq175671 Length=46863 Score = 82.4 bits (90), Expect = 4e-12 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||| |||||||| |||||||||||||||| |||||||||||||| Sbjct 15817 GCCCGCGTCGACCTTTTATATAATAAATACATCCCTTCCAGAAGTTGGGGTTTGTTGCAC 15758 >seq44392 Length=18013 Score = 82.4 bits (90), Expect = 4e-12 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||| || ||||||||||||||||||||| ||||||||||||||||||| Sbjct 11748 GCCCGCGTCGACCTTATAGCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCAC 11807 >seq243979 Length=15182 Score = 80.6 bits (88), Expect = 2e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGATT 8908 |||||||||||||||||||||||||||||| ||| |||| ||||||||||||| || Sbjct 1217 TTGACCTTTTATCTAATAAATGCATCCCTTACAGCAGTCAAGGTTTGTTGCACGTTT 1161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28325254916904