Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq168246 172 2e-39 seq157229 172 2e-39 seq101933 172 2e-39 seq16211 172 2e-39 seq5028 172 2e-39 seq127451 163 1e-36 seq146134 156 2e-34 seq163645 154 6e-34 seq119930 141 4e-30 seq159859 132 2e-27 seq17741 122 3e-24 seq3656 102 3e-18 seq62950 98.7 4e-17 seq131785 86.0 2e-13 >seq168246 Length=155943 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 73465 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 73406 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 73405 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 73348 >seq157229 Length=104479 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 3366 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 3425 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3426 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 3483 >seq101933 Length=83955 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 13728 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 13787 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 13788 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 13845 >seq16211 Length=100906 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 19591 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 19532 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 19531 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 19474 >seq5028 Length=36719 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 29697 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 29756 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 29757 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 29814 Score = 147 bits (162), Expect = 8e-32 Identities = 104/118 (88%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||| Sbjct 29992 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCT- 30050 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| || || ||||||||||||||||||||||||||||| ||||||| Sbjct 30051 CTTCAATGGGATCTTTTGTCTTGGTCGGAGGAGAAATTACCAAACGTCTAACATTCCC 30108 >seq127451 Length=36255 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 26354 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 26413 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 26414 CTTCAATGGAATCTTTTATCCCGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 26471 >seq146134 Length=1563 Score = 156 bits (172), Expect = 2e-34 Identities = 103/113 (91%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| |||| |||||||||||| Sbjct 111 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACA--ATGCATAGGATTAGCCG 54 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCA 114 |||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 53 CTTCAATGGGATTTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCA 1 >seq163645 Length=8059 Score = 154 bits (170), Expect = 6e-34 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||| |||| |||||| |||||| ||| |||| ||||| | ||||||||| Sbjct 3155 TTTATGATACTAGGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCA 3096 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3095 CTTCAATCGTATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 3038 >seq119930 Length=168905 Score = 141 bits (156), Expect = 4e-30 Identities = 103/118 (87%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 39955 TTTATGATACTATACAATTTGTGCGACCAGATATCTATACAATATGCATGGGATTAGCCG 39896 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||||| |||||||| |||||||||||||||| ||||| |||||||||| Sbjct 39895 CTTTAATGGGATCTTTTATCCTGATCGGAGGAGAAATTACTAAACG-ATAGCATTCCC 39839 >seq159859 Length=10647 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 6/118 (5%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| |||||| ||||| ||| |||| ||||| | |||||||||| Sbjct 3903 TTTATGATACTATACAATTTGTGCGACCAGGTGTCCATACAATATGCATGGGATTAGCCG 3844 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||| ||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 3843 CTTCA------TCTTTTATCCTGGTCGGAGGAGAAATTACCAAACATCTAGCATTCCC 3792 >seq17741 Length=66633 Score = 122 bits (134), Expect = 3e-24 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 40 ACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATT 99 ||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 32726 ACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATCCTAGTCGGAGGAGAAATT 32785 Query 100 ACCAAACGTCTAGCATTCCC 119 |||||||||||||||||||| Sbjct 32786 ACCAAACGTCTAGCATTCCC 32805 >seq3656 Length=10674 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 44 TATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCA 103 ||||| | ||||||| |||| |||||||||| ||||||||||| ||||||||||||||| Sbjct 1883 TATGCATGGGATTAGATGCTTTAATGGGATCTTTTATCCTGGTCAGAGGAGAAATTACCA 1942 Query 104 AACGTCTAGCATTCCC 119 ||||||||||||| || Sbjct 1943 AACGTCTAGCATTACC 1958 >seq62950 Length=49524 Score = 98.7 bits (108), Expect = 4e-17 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || |||||| |||||| ||| |||| ||||| | ||||||||| Sbjct 22968 TTTATGATACTATGTAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCA 23027 Query 62 CTTCAATGGGATCTGTTATCCT 83 |||||||||||||| ||||||| Sbjct 23028 CTTCAATGGGATCTTTTATCCT 23049 >seq131785 Length=97989 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57 AGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 66823 AGCCGCTTCGATGGGATCTCTTATCTAGGTCGGAGAAGAAATTACCAAACGTCTAGCATT 66882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19011350784960