Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_007652.1 Length=14071 Score E Sequences producing significant alignments: (Bits) Value seq4002 78.8 8e-11 >seq4002 Length=71268 Score = 78.8 bits (86), Expect = 8e-11 Identities = 217/313 (69%), Gaps = 31/313 (10%) Strand=Plus/Plus Query 6603 ACCACAACACAAGCAACTGCA-CAACTGACAACACCAACAGCCCCAAAAGCAAGCATAGC 6661 || |||||| |||||| ||| |||| | ||||| ||||| | ||| ||||| ||| | Sbjct 37264 ACAACAACAACAGCAACAGCAACAACAG-CAACAACAACAACAACAATAGCAACAATAAC 37322 Query 6662 ACCCAAGAACAGACAGGCAACAACCaaaaaaaCCGAAACGGGCACCacaacaacaagcag 6721 | | || |||| |||| ||||||| | || ||| ||| | || |||||| ||| | Sbjct 37323 AAC-AACAACA-ACAG-CAACAACAACAATAAC---AACAGCAACAACAACAGCAACAAC 37376 Query 6722 agcaaagaaaaccaacaacc-caacagagacagcaacaacaactctcaaagcaacaacag 6780 | ||| || | ||| ||| || ||| ||||||| |||||| ||| ||||||||| Sbjct 37377 AACAAC-AATAGCAATAACAACAGCAGCAACAGCAATAACAACAG-CAA--CAACAACAG 37432 Query 6781 aaacaggcaagggcaaagaGGGGCCAACA-CAGCACACAATCA-AAGAACAGCCCGAAAC 6838 |||| ||| |||| | ||||| ||||| |||| | || |||||| ||| Sbjct 37433 CAACAA-CAACAGCAATAA-----CAACAGCAGCA-ACAACAACAACAACAGC----AAC 37481 Query 6839 AACAGCAGGAGAAACAACTAC----CCCACAGTCAAGAAGAACAACCAGCAGGCCAGCCC 6894 |||||||| | |||||| || | |||| ||| | |||||| | | |||| Sbjct 37482 AACAGCAGCAATAACAACAACAGCAACAACAG-CAACAGCAACAACAACAACAACAGCAA 37540 Query 6895 CAACAACAAAAAC 6907 ||||||||| ||| Sbjct 37541 CAACAACAACAAC 37553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 44821436399274