Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq159548 172 2e-39 seq80647 172 2e-39 seq60756 159 1e-35 seq150168 145 3e-31 seq100550 98.7 4e-17 seq109223 93.3 2e-15 seq67963 89.7 2e-14 seq85093 86.0 2e-13 seq69718 80.6 1e-11 >seq159548 Length=155745 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 73290 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 73231 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 73230 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 73173 >seq80647 Length=49916 Score = 172 bits (190), Expect = 2e-39 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 30122 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCCG 30063 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 30062 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 30005 >seq60756 Length=109483 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||| | Sbjct 106566 TTTATGATACTATGCAATTTGTGCGACCAGATGTCCATACAATATGCATGGGATTAGCTG 106625 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 106626 CTTCAATAGGATCTTTTATCCTAGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 106683 >seq150168 Length=594 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||| |||| |||| || |||||| |||||| ||| |||| ||||| | |||||||| Sbjct 511 TTTAGGATAATATGTAATTTGTGCGACCAGATGTCCATACAATATGCATGAGATTAGCCA 452 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 451 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTTTAGCATTCCC 394 >seq100550 Length=75020 Score = 98.7 bits (108), Expect = 4e-17 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||| | ||| |||| ||||| | ||||||||| Sbjct 51297 TTTATGATACTATGCAATTTGTGCGACCATATGTCCATACAATATGCATGGGATTAGCCA 51238 Query 62 CTTCAATGGGATCTGTTATCCT 83 |||||||||||||| ||||||| Sbjct 51237 CTTCAATGGGATCTTTTATCCT 51216 >seq109223 Length=1655 Score = 93.3 bits (102), Expect = 2e-15 Identities = 53/54 (98%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 66 AATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1655 AATGGGATCTTTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 1602 >seq67963 Length=90439 Score = 89.7 bits (98), Expect = 2e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| ||| |||| ||||| | |||||||||| Sbjct 80946 TTTATGATACTATGCAATTTGTACGACCAGATGTCCATACAATATGCATGGGATTAGCCG 80887 Query 62 CTTCAATGGGATCT 75 |||||||||| ||| Sbjct 80886 CTTCAATGGGGTCT 80873 >seq85093 Length=79697 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57 AGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 50443 AGCCGCTTCGATGGGATCTCTTATCTAGGTCGGAGAAGAAATTACCAAACGTCTAGCATT 50502 >seq69718 Length=111023 Score = 80.6 bits (88), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAG-GATTAGCC 60 ||||||||| | || || |||| | | ||||| | ||| |||| | | |||||||| Sbjct 95482 TTTATGATATTGTGTAACTTGTACAATCAGAATCTCACACAATATGTATGGTGATTAGCC 95423 Query 61 GCTTCAAT--GGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 |||||||| | ||| | ||||||||||||| ||| |||||||||| ||||| Sbjct 95422 GCTTCAATTAGAGATGTTTTATCCTGGTCGGCAGAGGAATTACCAAAAGTCTA 95370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19013162960640